Difference between revisions of "Glossary"

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A list of terms used in various pages in this wiki that may need clarification.
 
A list of terms used in various pages in this wiki that may need clarification.
  
==Genomic Terminology ==
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== Genomic Evolution Terminology ==
* [[Genomic Feature]]
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* [[Conserved Non-Coding Sequence]] ([[CNS]])
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*[[Biased fractionation]]
* [[High-scoring segment pair]] ([[HSP]])
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*[[Chromosome Rearrangement]]  
* [[Synteny]]
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*[[Conserved Non-Coding Sequence]] ([[CNS]])  
* [[Whole Genome Duplication]]
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*[[Contig]]
* [[Homolog]]
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*[[Deletion]]
* [[Homeolog]]
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*[[Diploidization]]
* [[Ortholog]]
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*[[DNA alignment]]
* [[Perfect Ortholog]]
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*[[Dotplot]]
* [[Paralog]]
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*[[Fractionation]]
* [[Syntelog]]
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*[[Genespace]]
* [[Inversion]]
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*[[Genomic Feature]]
* [[Local Gene Duplication]]
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*[[High-scoring segment pair]] ([[HSP]])  
* [[Tandem Gene Duplication]]
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*[[Homolog]]  
* [[Deletion]]
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*[[Homeolog]]  
* [[Transposition]]
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*[[Insertion]]  
* [[Insertion]]
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*[[In-Paralog]]  
* [[Fractionation]]
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*[[Inversion]]
* [[Synonymous/Nonsynonymous Mutations (Ks/Kn)]]
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*[[Local Gene Duplication]]
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*[[Neofunctionalization]]  
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*[[Ortholog]]  
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*[[Out-Paralog]]  
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*[[Paleopolyploid]]  
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*[[Paralog]]  
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*[[Perfect Ortholog]]  
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*[[Plant paleopolyploidy]]  
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*[[Polyploid]]  
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*[[Protein alignment]]  
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*[[Repeat sequence]]  
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*[[Segmental Duplication]]
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*[[Speciation]]
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*[[Subfunctionalization]]  
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*[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]]
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*[[Syntelog]]
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*[[Synteny]]
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*[[Tandem Gene Duplication]]
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*[[Translocation]]
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*[[Transposition]]
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*[[Whole Genome Duplication]]
  
 
==Methodology==
 
==Methodology==
* [[Flanking Gene Method]] for detecting gene loss and transposition events
 
 
* [[Collinear Gene Order]] for detecting syntenic regions
 
* [[Collinear Gene Order]] for detecting syntenic regions
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* [[Flanking Gene Method]] for detecting gene loss and transposition events
 
* [[Useful divergence]] for comparing genomic regions
 
* [[Useful divergence]] for comparing genomic regions
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* [[Data visualization]]:  data abstraction for human perception
  
 
== Algorithm Terms ==
 
== Algorithm Terms ==
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* [[Local alignment]]
 
* [[Local alignment]]
 
* [[Score]]
 
* [[Score]]
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* [[Scoring Matrix]]
 
* [[Word size]]
 
* [[Word size]]
  
== API Terms ==
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== Application Programming Interface (API) Terms ==
  
 
*[[Chromosome]]
 
*[[Chromosome]]
 
*[[Dataset]]
 
*[[Dataset]]
*[[Feature]]
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*[[Dataset group]]
*[[Organism]]
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*[[Genomic feature]]
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*[[Organism description]]
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 +
== CoGe Tools ==
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*[[CoGe NCBI Loader]]

Latest revision as of 11:47, 16 January 2015

A list of terms used in various pages in this wiki that may need clarification.

Genomic Evolution Terminology

Methodology

Algorithm Terms

Application Programming Interface (API) Terms

CoGe Tools