Difference between revisions of "Glossary"
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== Genomic Evolution Terminology == | == Genomic Evolution Terminology == | ||
| − | *[[ | + | *[[Chromosome Rearrangement]] |
| − | + | ||
*[[Conserved Non-Coding Sequence]] ([[CNS]]) | *[[Conserved Non-Coding Sequence]] ([[CNS]]) | ||
| + | *[[Contig]] | ||
| + | *[[Deletion]] | ||
| + | *[[Diploidization]] | ||
| + | *[[DNA alignment]] | ||
| + | *[[Dotplot]] | ||
| + | *[[Genespace]] | ||
| + | *[[Genomic Feature]] | ||
*[[High-scoring segment pair]] ([[HSP]]) | *[[High-scoring segment pair]] ([[HSP]]) | ||
| − | |||
| − | |||
*[[Homolog]] | *[[Homolog]] | ||
*[[Homeolog]] | *[[Homeolog]] | ||
| − | *[[ | + | *[[Insertion]] |
| − | + | ||
| − | + | ||
| − | + | ||
*[[In-Paralog]] | *[[In-Paralog]] | ||
| − | |||
*[[Inversion]] | *[[Inversion]] | ||
*[[Local Gene Duplication]] | *[[Local Gene Duplication]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
*[[Neofunctionalization]] | *[[Neofunctionalization]] | ||
| − | *[[ | + | *[[Ortholog]] |
| − | *[[ | + | *[[Out-Paralog]] |
| − | + | ||
*[[Paleopolyploid]] | *[[Paleopolyploid]] | ||
| + | *[[Paralog]] | ||
| + | *[[Perfect Ortholog]] | ||
| + | *[[Protein alignment]] | ||
| + | *[[Subfunctionalization]] | ||
| + | *[[Synonymous/Nonsynonymous Mutations (Ks/Kn)]] | ||
| + | *[[Syntelog]] | ||
| + | *[[Synteny]] | ||
| + | *[[Tandem Gene Duplication]] | ||
| + | *[[Transposition]] | ||
| + | *[[Whole Genome Duplication]] | ||
==Methodology== | ==Methodology== | ||
Revision as of 00:34, 24 September 2009
A list of terms used in various pages in this wiki that may need clarification.
Genomic Evolution Terminology
- Chromosome Rearrangement
- Conserved Non-Coding Sequence (CNS)
- Contig
- Deletion
- Diploidization
- DNA alignment
- Dotplot
- Genespace
- Genomic Feature
- High-scoring segment pair (HSP)
- Homolog
- Homeolog
- Insertion
- In-Paralog
- Inversion
- Local Gene Duplication
- Neofunctionalization
- Ortholog
- Out-Paralog
- Paleopolyploid
- Paralog
- Perfect Ortholog
- Protein alignment
- Subfunctionalization
- Synonymous/Nonsynonymous Mutations (Ks/Kn)
- Syntelog
- Synteny
- Tandem Gene Duplication
- Transposition
- Whole Genome Duplication
Methodology
- Flanking Gene Method for detecting gene loss and transposition events
- Collinear Gene Order for detecting syntenic regions
- Useful divergence for comparing genomic regions
