Difference between revisions of "Glossary"
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A list of terms used in various pages in this wiki that may need clarification. | A list of terms used in various pages in this wiki that may need clarification. | ||
| − | ==Genomic Evolution Terminology == | + | == Genomic Evolution Terminology == |
| − | * [[ | + | |
| − | * [[ | + | *[[Biased fractionation]] |
| − | * [[Conserved Non-Coding Sequence]] ([[CNS]]) | + | *[[Chromosome Rearrangement]] |
| − | * [[High-scoring segment pair]] ([[HSP]]) | + | *[[Conserved Non-Coding Sequence]] ([[CNS]]) |
| − | * [[ | + | *[[Contig]] |
| − | * [[ | + | *[[Deletion]] |
| − | * [[ | + | *[[Diploidization]] |
| − | * [[ | + | *[[DNA alignment]] |
| − | * [[ | + | *[[Dotplot]] |
| − | * [[ | + | *[[Fractionation]] |
| − | * [[ | + | *[[Genespace]] |
| − | * [[ | + | *[[Genomic Feature]] |
| − | * [[ | + | *[[High-scoring segment pair]] ([[HSP]]) |
| − | * [[ | + | *[[Homolog]] |
| − | * [[ | + | *[[Homeolog]] |
| − | * [[ | + | *[[Insertion]] |
| − | * [[ | + | *[[In-Paralog]] |
| − | * [[ | + | *[[Inversion]] |
| − | * [[ | + | *[[Local Gene Duplication]] |
| − | * [[ | + | *[[Neofunctionalization]] |
| − | * [[ | + | *[[Ortholog]] |
| − | * [[ | + | *[[Out-Paralog]] |
| − | * [[ | + | *[[Paleopolyploid]] |
| − | * [[Synonymous/Nonsynonymous Mutations (Ks/ | + | *[[Paralog]] |
| − | * [[ | + | *[[Perfect Ortholog]] |
| − | * [[ | + | *[[Plant paleopolyploidy]] |
| − | * [[ | + | *[[Polyploid]] |
| + | *[[Protein alignment]] | ||
| + | *[[Repeat sequence]] | ||
| + | *[[Segmental Duplication]] | ||
| + | *[[Speciation]] | ||
| + | *[[Subfunctionalization]] | ||
| + | *[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]] | ||
| + | *[[Syntelog]] | ||
| + | *[[Synteny]] | ||
| + | *[[Tandem Gene Duplication]] | ||
| + | *[[Translocation]] | ||
| + | *[[Transposition]] | ||
| + | *[[Whole Genome Duplication]] | ||
==Methodology== | ==Methodology== | ||
| − | |||
* [[Collinear Gene Order]] for detecting syntenic regions | * [[Collinear Gene Order]] for detecting syntenic regions | ||
| + | * [[Flanking Gene Method]] for detecting gene loss and transposition events | ||
* [[Useful divergence]] for comparing genomic regions | * [[Useful divergence]] for comparing genomic regions | ||
| + | * [[Data visualization]]: data abstraction for human perception | ||
== Algorithm Terms == | == Algorithm Terms == | ||
| Line 40: | Line 53: | ||
* [[Local alignment]] | * [[Local alignment]] | ||
* [[Score]] | * [[Score]] | ||
| + | * [[Scoring Matrix]] | ||
* [[Word size]] | * [[Word size]] | ||
| − | == API Terms == | + | == Application Programming Interface (API) Terms == |
*[[Chromosome]] | *[[Chromosome]] | ||
*[[Dataset]] | *[[Dataset]] | ||
| − | *[[ | + | *[[Dataset group]] |
| − | *[[Organism]] | + | *[[Genomic feature]] |
| + | *[[Organism description]] | ||
| + | |||
| + | == CoGe Tools == | ||
| + | *[[CoGe NCBI Loader]] | ||
Latest revision as of 11:47, 16 January 2015
A list of terms used in various pages in this wiki that may need clarification.
Contents
Genomic Evolution Terminology
- Biased fractionation
- Chromosome Rearrangement
- Conserved Non-Coding Sequence (CNS)
- Contig
- Deletion
- Diploidization
- DNA alignment
- Dotplot
- Fractionation
- Genespace
- Genomic Feature
- High-scoring segment pair (HSP)
- Homolog
- Homeolog
- Insertion
- In-Paralog
- Inversion
- Local Gene Duplication
- Neofunctionalization
- Ortholog
- Out-Paralog
- Paleopolyploid
- Paralog
- Perfect Ortholog
- Plant paleopolyploidy
- Polyploid
- Protein alignment
- Repeat sequence
- Segmental Duplication
- Speciation
- Subfunctionalization
- Synonymous/Nonsynonymous Mutations (Ks/Ka)
- Syntelog
- Synteny
- Tandem Gene Duplication
- Translocation
- Transposition
- Whole Genome Duplication
Methodology
- Collinear Gene Order for detecting syntenic regions
- Flanking Gene Method for detecting gene loss and transposition events
- Useful divergence for comparing genomic regions
- Data visualization: data abstraction for human perception
