Difference between revisions of "Ramosa2 orthologs and CNSs"

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[[Image:GEvo-change-region-extent.png|thumb|600px|right|Changing the amount of up and downstream sequence for a sequence submission in GEvo]]
 
[[Image:GEvo-change-region-extent.png|thumb|600px|right|Changing the amount of up and downstream sequence for a sequence submission in GEvo]]
 
[[Image:GEvo-identifying-conserved-sequence-ra2.png|thumb|600px|right|Identifying conserved sequence around ramora2 in GEvo]]
 
[[Image:GEvo-identifying-conserved-sequence-ra2.png|thumb|600px|right|Identifying conserved sequence around ramora2 in GEvo]]
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
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[[Image:GEvo-blastn.png|thumb|600px|right|Selecting blastn in GEvo]]
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
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[[Image:GEvo-ra2-cns-discovery.png|thumb|600px|right|Using blastn in GEvo to identify conserved noncoding sequences for ramora2 in grasses]]
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
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[[Image:GEvo-image-parameters-hsp-limit.png|thumb|600px|right|Setting HSP limits in GEvo]]

Revision as of 16:10, 15 October 2009

GenBank Accession NM_001138446 from NCBI
Configuring CoGeBlast to search multiple grass genomes
HSP Table from CoGeBlast. HSPs are commonly known as "Blast Hits"
Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box
GEvo result of ra2 in syntenic region between Brachypodium and Rice
Checking a direct sequence submission in GEvo
Selecting the reverse complement option for a sequence submission in GEvo
Identifying a sequence that needs to be reverse complemented in GEvo
Option increase up and downstream sequence to all sequence submissions
Changing the amount of up and downstream sequence for a sequence submission in GEvo
Identifying conserved sequence around ramora2 in GEvo
Selecting blastn in GEvo
Using blastn in GEvo to identify conserved noncoding sequences for ramora2 in grasses
Setting HSP limits in GEvo