Variant data

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EPIC-CoGe's genome browser supports the visualization of variant data on any genome in CoGe.

You can load and visualize variant data by:

  1. Loading a VCF file for a genome using LoadExperiment
    1. Note: One loaded file in coge is called an experiment
  2. Using GenomeView to browse the genome
  3. Select the appropriate experiment for visualization

Visualizing Variant Data

Histograms showing the relative number of variants are visualized when the density is high

Screen Shot 2014-10-13 at 10.23.23 AM.png

Individual variants are seen when the density of variants is lower. Different colors represent different types of SNPs

Screen Shot 2014-10-13 at 10.23.40 AM.png

Text describing the variant is seen when density of variants is sufficiently low.

Screen Shot 2014-10-13 at 10.24.09 AM.png