We have detected that your browser currently has JavaScript disabled. In order for CoGe to function properly JavaScript must be enabled in your browser.
Would you like to log out of all CyVerse applications?
Log out of CoGe only
Log out of all CyVerse services
CoGe
advanced
type:
any
experiment
feature
genome
notebook
organism
certified:
any
yes
no
feature type:
metadata key:
metadata value:
tag:
search
My Data
Tools
OrganismView
CoGeBlast
FeatView
SynFind
SynMap
SynMap3D
GEvo
Load Genome
LoadExp+
Taxonomy
Help
CoGePedia
Page Docs
Forums
FAQ
Tutorials
Cite CoGe
System Support
Log in
Organisms:
1
}
Lotus japonicus (id38496)
Organism Information
Name:
Lotus japonicus
Description:
Eukaryota
;
Viridiplantae
;
Streptophyta
;
Streptophytina
;
Embryophyta
;
Tracheophyta
;
Euphyllophyta
;
Spermatophyta
;
Magnoliophyta
;
eudicotyledons
;
core eudicotyledons
;
rosids
;
fabids
;
Fabales
;
Fabaceae
;
Papilionoideae
;
Loteae
;
Lotus
;
Tools:
OrganismView
 | 
CodeOn
Search:
 
 
Genomes:
5
Lotus japonicus (Lotus japonicus) (vHPI v01, id62163): unmasked
Lotus japonicus (vBurtii, id63162): scaffolds
Lotus japonicus (v3, id37292): unmasked
Lotus japonicus (Lotus japonicus accession MG-20) (v3, id58116): unmasked
Lotus japonicus (Lotus japonicus Gifu) (v1.2, id58121): unmasked
Genome Information
Name:
Lotus japonicus Gifu
Genome ID:
58121
Sequence type:
unmasked: unmasked sequence data (gstid1)
Owner:
Andrew Nelson
Length:
554,275,048 bp
Tools:
GenomeInfo
 | 
OrganismView
 | 
CodeOn
 | 
SynMap
 | 
CoGeBlast
 | 
Add to GenomeList
Datasets:
2
genome.faa(v1.2, id138259)
Lotusjaponicus_Gifu_v1.2_predictedGenes.gff3(v1.2, id138260)
Dataset Information
Name:
genome.faa (id138259)
Source:
Lotus Base (id6594)
Version:
1.2
Organism:
Lotus japonicus
Created:
2020-05-19 16:20:36
Chromosomes:
9
Total length:
554,275,048 bp
Tools:
OrganismView
Chromosomes:
LjG1.1_chloro (150,518 bp)
LjG1.1_chr0 (3,466,482 bp)
LjG1.1_chr1 (137,250,648 bp)
LjG1.1_chr2 (95,628,465 bp)
LjG1.1_chr3 (97,635,135 bp)
LjG1.1_chr4 (83,711,341 bp)
LjG1.1_chr5 (68,161,469 bp)
LjG1.1_chr6 (67,910,847 bp)
LjG1.1_mito (360,143 bp)
Chromosome Information
Chromosome ID:
LjG1.1_chloro
Nucleotides:
150,518 bp
Launch Genome Viewer
Start:
Get Sequence
Start:
End:
Genomes:
0
Remove
Clear
Sort
No Genome Selected
Send to GenomeList
Do not generate features for ncRNA genes (CDS genes only)
Include feature annotations (descriptive text; Geneontology; etc)
Ensure that GFF Name tag is unique for each feature
Do not propagate duplicate annotations to children
For GFF "ID" and "Parent" tags, use unique:
Name
Number
Export GFF File