Linking to OrganismView: Difference between revisions
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This will automatically begin a search for all organism names that contain 'coli'. | This will automatically begin a search for all organism names that contain 'coli'. | ||
The parameters that can be passed on the URL are: | The parameters that can be passed on the URL are:. | ||
#org_name=name search for any organism whose name contains 'name' | #org_name=name search for any organism whose name contains 'name' | ||
#org_desc=description search for any organism whose description contains 'description'. CoGe usually uses [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi NCBI's organism taxonomy descriptions.] | #org_desc=description search for any organism whose description contains 'description'. CoGe usually uses [http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi NCBI's organism taxonomy descriptions.] | ||
#oid=id retrieve an organism by the [[CoGe database id]] for that organism. (CoGe database ids are always a number.) | |||
#dsname=name search for a [[CoGe dataset]] by name. | |||
#dsid=id retrieve a [[CoGe dataset]] by the [[CoGe database id]] for that dataset. (CoGe database ids are always a number.) | |||
#dsgid=id retreive a [[CoGe dataset group]] by the [[CoGe database id]] for that dataset group. (CoGe database ids are always a number.) | |||
Latest revision as of 19:17, 29 December 2009
It is easy to link to OrganismView and either retrieve a specific organism or search for an organism by name or description. Parameters to find an organism can be passed through CGI on the URL. For example:
http://syntney.cnr.berkeley.edu/CoGe/OrganismView.pl?org_name=coli
This will automatically begin a search for all organism names that contain 'coli'.
The parameters that can be passed on the URL are:.
- org_name=name search for any organism whose name contains 'name'
- org_desc=description search for any organism whose description contains 'description'. CoGe usually uses NCBI's organism taxonomy descriptions.
- oid=id retrieve an organism by the CoGe database id for that organism. (CoGe database ids are always a number.)
- dsname=name search for a CoGe dataset by name.
- dsid=id retrieve a CoGe dataset by the CoGe database id for that dataset. (CoGe database ids are always a number.)
- dsgid=id retreive a CoGe dataset group by the CoGe database id for that dataset group. (CoGe database ids are always a number.)