Data visualization: Difference between revisions

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Created page with 'One of the major difficulties with genomic data is creating visual representations that enable people to quickly and easily identify patterns. This is a combination of balancing...'
 
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*the coloration of the data
*the coloration of the data


Here is an example of a first pass visualization of a codon substitution matrix generated by [[SynSub]] and the refined version.  The refined version collapsed table margins and used a color schema to enable differentiation of numerical data across a wide range of values.
Here are examples visualization of a codon substitution matrix generated by [[SynSub]] and the refined version.  One uses the traditional rainbow of colors, one bases values off of red, yellow and blue.


[[Image:SynSub data visualization fist pass.png|thumb|1000px|center|First pass]]
[[Image:SynSub data visualization RYB.png|thumb|1000px|center|Red-Yellow-Blue]]
[[Image:SynSub data visualization refined.png|thumb|1000px|center|First pass]]
[[Image:SynSub data visualization rainbow.png|thumb|1000px|center|Rainbow]]
 
[[Image:SynSub arabidopsis lyrata versus thaliana first RYB.png|thumb|1000px|center|Red-Yellow-Blue]]
[[Image:SynSub arabidopsis lyrata versus thaliana rainbow.png|thumb|1000px|center|Rainbow]]

Latest revision as of 19:23, 28 August 2010

One of the major difficulties with genomic data is creating visual representations that enable people to quickly and easily identify patterns. This is a combination of balancing:

  • how much data to show
  • the detail of the data
  • the arrangement of the data
  • the coloration of the data

Here are examples visualization of a codon substitution matrix generated by SynSub and the refined version. One uses the traditional rainbow of colors, one bases values off of red, yellow and blue.

Red-Yellow-Blue
Rainbow
Red-Yellow-Blue
Rainbow