Glossary: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 34: | Line 34: | ||
*[[Speciation]] | *[[Speciation]] | ||
*[[Subfunctionalization]] | *[[Subfunctionalization]] | ||
*[[Synonymous/Nonsynonymous Mutations (Ks/ | *[[Synonymous/Nonsynonymous Mutations (Ks/Ka)]] | ||
*[[Syntelog]] | *[[Syntelog]] | ||
*[[Synteny]] | *[[Synteny]] | ||
| Line 56: | Line 56: | ||
* [[Word size]] | * [[Word size]] | ||
== API Terms == | == Application Programming Interface (API) Terms == | ||
*[[Chromosome]] | *[[Chromosome]] | ||
| Line 63: | Line 63: | ||
*[[Genomic feature]] | *[[Genomic feature]] | ||
*[[Organism description]] | *[[Organism description]] | ||
== CoGe Tools == | |||
*[[CoGe NCBI Loader]] | |||
Latest revision as of 17:47, 16 January 2015
A list of terms used in various pages in this wiki that may need clarification.
Genomic Evolution Terminology
- Biased fractionation
- Chromosome Rearrangement
- Conserved Non-Coding Sequence (CNS)
- Contig
- Deletion
- Diploidization
- DNA alignment
- Dotplot
- Fractionation
- Genespace
- Genomic Feature
- High-scoring segment pair (HSP)
- Homolog
- Homeolog
- Insertion
- In-Paralog
- Inversion
- Local Gene Duplication
- Neofunctionalization
- Ortholog
- Out-Paralog
- Paleopolyploid
- Paralog
- Perfect Ortholog
- Plant paleopolyploidy
- Polyploid
- Protein alignment
- Repeat sequence
- Segmental Duplication
- Speciation
- Subfunctionalization
- Synonymous/Nonsynonymous Mutations (Ks/Ka)
- Syntelog
- Synteny
- Tandem Gene Duplication
- Translocation
- Transposition
- Whole Genome Duplication
Methodology
- Collinear Gene Order for detecting syntenic regions
- Flanking Gene Method for detecting gene loss and transposition events
- Useful divergence for comparing genomic regions
- Data visualization: data abstraction for human perception