Difference between revisions of "Mimulus v. tomato"
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[[File:Screen shot 2012-07-06 at 3.20.46 PM.png|thumb|800px|center| http://genomevolution.org/r/51re]] | [[File:Screen shot 2012-07-06 at 3.20.46 PM.png|thumb|800px|center| http://genomevolution.org/r/51re]] | ||
[[File:Screen shot 2012-07-06 at 3.21.18 PM.png|thumb|800px|center| http://genomevolution.org/r/51mk]] | [[File:Screen shot 2012-07-06 at 3.21.18 PM.png|thumb|800px|center| http://genomevolution.org/r/51mk]] | ||
− | + | = Ks histograms of syntenic gene pairs = | |
+ | ==Conclusion: == | ||
+ | Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons. Evidence for independent whole genome duplications in the lineages of mimulus and solanum. | ||
===No [[syntenic depth]] screening=== | ===No [[syntenic depth]] screening=== |
Latest revision as of 09:03, 7 July 2012
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Contents
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Conclusion:
Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons. Evidence for independent whole genome duplications in the lineages of mimulus and solanum.
No syntenic depth screening
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51li | ]http://genomevolution.org/r/51up | |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uq | http://genomevolution.org/r/4tpr | |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v0 | http://genomevolution.org/r/51v1 |
1:1 syntenic depth screening (identified primarily orthologous syntenic gene pairs
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uv | http://genomevolution.org/r/51uw | Ortholog screening 1:1 Syntenic depth |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51v4 | http://genomevolution.org/r/51v6 | Ortholog screening 1:1 Syntenic depth |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v5 | http://genomevolution.org/r/51v3 | Ortholog screening 1:1 Syntenic depth |