Non-X-alignments: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| Line 1: | Line 1: | ||
This tracks examples of bacteria and archaea [[syntenic dotplots]] which do not show the classical [[x-alignment]] pattern of inversions. One possible methodological reason for these non-x-alignments is mis-assembly. | This tracks examples of bacteria and archaea [[syntenic dotplots]] which do not show the classical [[x-alignment]] pattern of inversions. One possible methodological reason for these non-x-alignments is mis-assembly. | ||
== | ==Genome-wide random oritentation== | ||
[[Image:7603 8665.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png|thumb|center|500px|Syntenic dotplot generated by SynMap between two species of Methanocaldococcus: Methanocaldococcus fervens strain AG86 (x-axis); Methanocaldococcus sp. strain FS406-22 (y-axis). Results can be regenerated at: http://genomevolution.org/r/oro]] | [[Image:7603 8665.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png|thumb|center|500px|Syntenic dotplot generated by SynMap between two species of Methanocaldococcus: Methanocaldococcus fervens strain AG86 (x-axis); Methanocaldococcus sp. strain FS406-22 (y-axis). Results can be regenerated at: http://genomevolution.org/r/oro]] | ||
[[Image:Master 6989 3415.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.37423447.33394801.png|thumb|center|500px|Syntenic dotplot generated by SynMap between two species of Thermococcus: gammatolerans strain DSM 15229; EJ3 (x-axis); onnurineus strain NA1 (y-axis). Results can be regenerated at: http://genomevolution.org/r/os7]] | [[Image:Master 6989 3415.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.37423447.33394801.png|thumb|center|500px|Syntenic dotplot generated by SynMap between two species of Thermococcus: gammatolerans strain DSM 15229; EJ3 (x-axis); onnurineus strain NA1 (y-axis). Results can be regenerated at: http://genomevolution.org/r/os7]] | ||
Revision as of 20:20, 21 August 2010
This tracks examples of bacteria and archaea syntenic dotplots which do not show the classical x-alignment pattern of inversions. One possible methodological reason for these non-x-alignments is mis-assembly.
Genome-wide random oritentation
