Potato-Utricularia-Genlisea Syntenic Depth

Follow this link for information on Syntenic depth.

Syntenic depth measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with Syntenic dotplots.

Table of syntenic depth measurements of potato versus Utricularia and Genlisea:

Parameters	Results
Window size: 10 Cutoff: 0.1% (One syntenic genes in a span of 10 genes) http://genomevolution.org/r/4nfz	Genlisea aurea Depth 1 5196 of 5705 91.08% Depth 2 446 of 5705 7.82% Depth 3 58 of 5705 1.02% Depth 4 5 of 5705 0.09% Utricularia gibba Depth 1 9307 of 14433 64.48% Depth 2 3393 of 14433 23.51% Depth 3 1130 of 14433 7.83% Depth 4 382 of 14433 2.65% Depth 5 134 of 14433 0.93% Depth 6 51 of 14433 0.35% Depth 7 26 of 14433 0.18% Depth 8 6 of 14433 0.04% Depth 9 4 of 14433 0.03%
Window size: 10 Cutoff: 0.2% (Two syntenic genes in a span of 10 genes) http://genomevolution.org/r/4nlz	Genlisea aurea Depth 1 1436 of 1478 97.16% Depth 2 39 of 1478 2.64% Depth 3 3 of 1478 0.20% Utricularia gibba Depth 1 3384 of 4215 80.28% Depth 2 651 of 4215 15.44% Depth 3 124 of 4215 2.94% Depth 4 42 of 4215 1.00% Depth 5 9 of 4215 0.21% Depth 6 5 of 4215 0.12%
Window size: 5 Cutoff: 0.1% (One syntenic genes in a span of 5 genes) http://genomevolution.org/r/4nlx	Genlisea aurea Depth 1 1295 of 1316 98.40% Depth 2 21 of 1316 1.60% Utricularia gibba Depth 1 2631 of 3158 83.31% Depth 2 460 of 3158 14.57% Depth 3 59 of 3158 1.87% Depth 4 6 of 3158 0.19% Depth 5 2 of 3158 0.06%
Window size: 20 Cutoff: 0.1% (two syntenic genes in a span of 20 genes) http://genomevolution.org/r/4nm1	Genlisea aurea Depth 1 2732 of 2880 94.86% Depth 2 142 of 2880 4.93% Depth 3 6 of 2880 0.21% Utricularia gibba Depth 1 7097 of 9850 72.05% Depth 2 1919 of 9850 19.48% Depth 3 569 of 9850 5.78% Depth 4 171 of 9850 1.74% Depth 5 59 of 9850 0.60% Depth 6 20 of 9850 0.20% Depth 7 6 of 9850 0.06% Depth 8 4 of 9850 0.04% Depth 9 2 of 9850 0.02% Depth 10 1 of 9850 0.01% Depth 12 1 of 9850 0.01% Depth 13 1 of 9850 0.01%