Tomato-Utricularia Syntenic Depth: Difference between revisions
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Created page with 'Follow this link for information on Syntenic depth. Syntenic depth measurements permit classifying the number of whole genome duplications that have happened in one lin...' |
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Using v4 of the Utricularia genome (http://genomevolution.org/CoGe//OrganismView.pl?dsgid=19456) | Using v4 of the Utricularia genome (http://genomevolution.org/CoGe//OrganismView.pl?dsgid=19456) | ||
==4 genes in 80== | ==4 genes in an 80 gene window== | ||
SynFind: http://genomevolution.org/r/4tqx | SynFind: http://genomevolution.org/r/4tqx | ||
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Depth 10 2 of 19459 0.01% | Depth 10 2 of 19459 0.01% | ||
==4 genes in 40== | ==4 genes in a 40 gene window== | ||
SynFind: http://genomevolution.org/r/4tqi | SynFind: http://genomevolution.org/r/4tqi | ||
Revision as of 17:58, 1 June 2012
Follow this link for information on Syntenic depth.
Syntenic depth measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with Syntenic dotplots.
Using v4 of the Utricularia genome (http://genomevolution.org/CoGe//OrganismView.pl?dsgid=19456)
4 genes in an 80 gene window
SynFind: http://genomevolution.org/r/4tqx
Utricularia gibba
Depth 1 6972 of 19459 35.83% Depth 2 4727 of 19459 24.29% Depth 3 3392 of 19459 17.43% Depth 4 2153 of 19459 11.06% Depth 5 1230 of 19459 6.32% Depth 6 603 of 19459 3.10% Depth 7 223 of 19459 1.15% Depth 8 118 of 19459 0.61% Depth 9 39 of 19459 0.20% Depth 10 2 of 19459 0.01%
4 genes in a 40 gene window
SynFind: http://genomevolution.org/r/4tqi
Utricularia gibba
Depth 1 5566 of 8468 65.73% Depth 2 2071 of 8468 24.46% Depth 3 664 of 8468 7.84% Depth 4 137 of 8468 1.62% Depth 5 25 of 8468 0.30% Depth 6 5 of 8468 0.06%