Difference between revisions of "Mimulus v. tomato"
From CoGepedia
(→Ks histograms of syntenic gene pairs) |
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| [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.log.nsd.hist.png]] http://genomevolution.org/r/51uv | | [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.log.nsd.hist.png]] http://genomevolution.org/r/51uv | ||
| [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.max1.log.nsd.hist.png]] http://genomevolution.org/r/51uw | | [[File:Master 8156 12289.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-.4.max1.log.nsd.hist.png]] http://genomevolution.org/r/51uw | ||
− | | Ortholog screening | + | | Ortholog screening 1:1 [[Syntenic depth]] |
|- | |- | ||
| Solanum lycopersicum (tomato) | | Solanum lycopersicum (tomato) | ||
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| Solanum lycopersicum (tomato) | | Solanum lycopersicum (tomato) | ||
| Solanum lycopersicum (tomato) | | Solanum lycopersicum (tomato) | ||
− | | | + | | [[File:Master 12289 12289.CDS-CDS.lastz.dag.all.go D20 g10 A5.aligncoords.Dm80.ma1.qac1.1.20.gcoords ct0.w1000.gene.ks.sr.cs1.csoN.log.nsd.hist.png]] http://genomevolution.org/r/51v4 |
− | | | + | | [[File:Master 12289 12289.CDS-CDS.lastz.dag.all.go D20 g10 A5.aligncoords.Dm80.ma1.qac1.1.20.gcoords ct0.w1000.gene.ks.sr.cs1.csoN.min-.4.max1.log.nsd.hist.png]] http://genomevolution.org/r/51v6 |
− | | Ortholog screening | + | | Ortholog screening 1:1 [[Syntenic depth]] |
|- | |- | ||
| Mimulus guttatus | | Mimulus guttatus |
Revision as of 08:55, 7 July 2012
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51li | http://genomevolution.org/r/51up | |
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uv | http://genomevolution.org/r/51uw | Ortholog screening 1:1 Syntenic depth |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uq | http://genomevolution.org/r/4tpr | |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51v4 | http://genomevolution.org/r/51v6 | Ortholog screening 1:1 Syntenic depth |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v0 | http://genomevolution.org/r/51v1 |