Difference between revisions of "Mimulus v. tomato"
From CoGepedia
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| [[File:Master 8156 8156.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.gcoords ct0.w800.ass.gene.s.ks.sr.cs1.csoS.min-1.max1.log.nsd.hist.png]] http://genomevolution.org/r/51v1 | | [[File:Master 8156 8156.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.gcoords ct0.w800.ass.gene.s.ks.sr.cs1.csoS.min-1.max1.log.nsd.hist.png]] http://genomevolution.org/r/51v1 | ||
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+ | | Mimulus guttatus | ||
+ | | Mimulus guttatus | ||
+ | | [[File:Master 8156 8156.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.log.nsd.hist.png ]] http://genomevolution.org/r/51v5 | ||
+ | | [[ File:Master 8156 8156.CDS-CDS.last.dag.all.go D20 g10 A5.aligncoords.qac1.1.40.gcoords ct0.w800.gene.s.ks.sr.cs1.csoS.min-1.max1.log.nsd.hist.png]] http://genomevolution.org/r/51v3 | ||
+ | | Ortholog screening 1:1 [[Syntenic depth]] | ||
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Revision as of 08:58, 7 July 2012
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51li | http://genomevolution.org/r/51up | |
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uv | http://genomevolution.org/r/51uw | Ortholog screening 1:1 Syntenic depth |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uq | http://genomevolution.org/r/4tpr | |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51v4 | http://genomevolution.org/r/51v6 | Ortholog screening 1:1 Syntenic depth |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v0 | http://genomevolution.org/r/51v1 | |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v5 | http://genomevolution.org/r/51v3 | Ortholog screening 1:1 Syntenic depth |