Difference between revisions of "Mimulus v. tomato"
From CoGepedia
(→Ks histograms of syntenic gene pairs) |
(→Conclusion: Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons) |
||
| Line 7: | Line 7: | ||
[[File:Screen shot 2012-07-06 at 3.21.18 PM.png|thumb|800px|center| http://genomevolution.org/r/51mk]] | [[File:Screen shot 2012-07-06 at 3.21.18 PM.png|thumb|800px|center| http://genomevolution.org/r/51mk]] | ||
= Ks histograms of syntenic gene pairs = | = Ks histograms of syntenic gene pairs = | ||
| − | ==Conclusion: | + | ==Conclusion: == |
| − | + | Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons. Evidence for independent whole genome duplications in the lineages of mimulus and solanum. | |
===No [[syntenic depth]] screening=== | ===No [[syntenic depth]] screening=== | ||
Latest revision as of 09:03, 7 July 2012
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Contents
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Conclusion:
Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons. Evidence for independent whole genome duplications in the lineages of mimulus and solanum.
No syntenic depth screening
| Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
|---|---|---|---|---|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51li
|
 ]http://genomevolution.org/r/51up
|
|
| Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uq
|
 http://genomevolution.org/r/4tpr
|
|
| Mimulus guttatus | Mimulus guttatus |  http://genomevolution.org/r/51v0
|
 http://genomevolution.org/r/51v1
|
1:1 syntenic depth screening (identified primarily orthologous syntenic gene pairs
| Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
|---|---|---|---|---|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uv
|
 http://genomevolution.org/r/51uw
|
Ortholog screening 1:1 Syntenic depth |
| Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51v4
|
 http://genomevolution.org/r/51v6
|
Ortholog screening 1:1 Syntenic depth |
| Mimulus guttatus | Mimulus guttatus |  http://genomevolution.org/r/51v5
|
 http://genomevolution.org/r/51v3
|
Ortholog screening 1:1 Syntenic depth |
