Mimulus v. tomato
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Revision as of 09:03, 7 July 2012 by Elyons (Talk | contribs) (→Conclusion: Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons)
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Contents
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Conclusion:
Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons. Evidence for independent whole genome duplications in the lineages of mimulus and solanum.
No syntenic depth screening
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51li | ]http://genomevolution.org/r/51up | |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uq | http://genomevolution.org/r/4tpr | |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v0 | http://genomevolution.org/r/51v1 |
1:1 syntenic depth screening (identified primarily orthologous syntenic gene pairs
Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
---|---|---|---|---|
Mimulus guttatus | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51uv | http://genomevolution.org/r/51uw | Ortholog screening 1:1 Syntenic depth |
Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) | http://genomevolution.org/r/51v4 | http://genomevolution.org/r/51v6 | Ortholog screening 1:1 Syntenic depth |
Mimulus guttatus | Mimulus guttatus | http://genomevolution.org/r/51v5 | http://genomevolution.org/r/51v3 | Ortholog screening 1:1 Syntenic depth |