Follow this link for information on Syntenic depth.
Syntenic depth measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with Syntenic dotplots.
Table of syntenic depth measurements of potato versus Utricularia and Genlisea:
Parameters
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Results
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Window size: 10
Cutoff: 0.1%
(One syntenic genes in a span of 10 genes)
http://genomevolution.org/r/4nfz
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Genlisea aurea
Depth 1 5196 of 5705 91.08%
Depth 2 446 of 5705 7.82%
Depth 3 58 of 5705 1.02%
Depth 4 5 of 5705 0.09%
Utricularia gibba
Depth 1 9307 of 14433 64.48%
Depth 2 3393 of 14433 23.51%
Depth 3 1130 of 14433 7.83%
Depth 4 382 of 14433 2.65%
Depth 5 134 of 14433 0.93%
Depth 6 51 of 14433 0.35%
Depth 7 26 of 14433 0.18%
Depth 8 6 of 14433 0.04%
Depth 9 4 of 14433 0.03%
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| Window size: 10
Cutoff: 0.2%
(Two syntenic genes in a span of 10 genes)
http://genomevolution.org/r/4nlz
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Genlisea aurea
Depth 1 1436 of 1478 97.16%
Depth 2 39 of 1478 2.64%
Depth 3 3 of 1478 0.20%
Utricularia gibba
Depth 1 3384 of 4215 80.28%
Depth 2 651 of 4215 15.44%
Depth 3 124 of 4215 2.94%
Depth 4 42 of 4215 1.00%
Depth 5 9 of 4215 0.21%
Depth 6 5 of 4215 0.12%
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| Window size: 5
Cutoff: 0.1%
(One syntenic genes in a span of 5 genes)
http://genomevolution.org/r/4nlx
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Genlisea aurea
Depth 1 1295 of 1316 98.40%
Depth 2 21 of 1316 1.60%
Utricularia gibba
Depth 1 2631 of 3158 83.31%
Depth 2 460 of 3158 14.57%
Depth 3 59 of 3158 1.87%
Depth 4 6 of 3158 0.19%
Depth 5 2 of 3158 0.06%
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