Mimulus v. tomato
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Revision as of 09:02, 7 July 2012 by Elyons (Talk | contribs) (→Ks histograms of syntenic gene pairs)
Note: evaluation of tomato is difficult as its polyploidy is not a string tetraploidy or hexaploidy: Tomato genome
Contents
Whole genome syntenic dotplots
High-resolution analysis of syntenic regions with GEvo
Fractionation appears to be independent among intragenomic syntenic regions
Ks histograms of syntenic gene pairs
Conclusion: Mean Ks values are smaller for intragenomic comparisons than intergenomic comparisons
No syntenic depth screening
| Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
|---|---|---|---|---|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51li
|
 ]http://genomevolution.org/r/51up
|
|
| Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uq
|
 http://genomevolution.org/r/4tpr
|
|
| Mimulus guttatus | Mimulus guttatus |  http://genomevolution.org/r/51v0
|
 http://genomevolution.org/r/51v1
|
1:1 syntenic depth screening (identified primarily orthologous syntenic gene pairs
| Org 1 | Org 2 | Full Hist | Banded Hist | Notes |
|---|---|---|---|---|
| Mimulus guttatus | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51uv
|
 http://genomevolution.org/r/51uw
|
Ortholog screening 1:1 Syntenic depth |
| Solanum lycopersicum (tomato) | Solanum lycopersicum (tomato) |  http://genomevolution.org/r/51v4
|
 http://genomevolution.org/r/51v6
|
Ortholog screening 1:1 Syntenic depth |
| Mimulus guttatus | Mimulus guttatus |  http://genomevolution.org/r/51v5
|
 http://genomevolution.org/r/51v3
|
Ortholog screening 1:1 Syntenic depth |
