Syntenic depth

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Syntenic depth refers to the number of times a genomic region (or genome) is syntenic to regions in another genome.

Tools in CoGe for classifying and quantitating syntenic depth:

Examples:

Organism Syntenic Depth
 Dotpot
E. coli DH10B to MG1655
 1:1
Human-Chimp 1:1
Rice-Brachypodium
 2:2
Sorghum-Maize 2:4


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