Genome Loaders

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These are the programs used behind the scenes to load genomes into CoGe. Currently, we have loaders for genomes in the following formats:

  • NCBI's GenBank
  • fasta
  • GFF
  • GAF
  • TIGR XML

And a host of custom programs for loading annotations that come in a variety of plain-text, tab delimited formats. Though these are mostly variations on the GFF annotation loader.