Difference between revisions of "User:Jschnable"
From CoGepedia
(→Publications) |
|||
| Line 1: | Line 1: | ||
| − | '''James Schnable''' | + | '''James Schnable''' |
Graduate student in the department of Plant and Microbial Biology at UC-Berkeley and a member of the Freeling lab. My research focuses on comparative grass genomics and the fate of genes following whole genome duplications. | Graduate student in the department of Plant and Microbial Biology at UC-Berkeley and a member of the Freeling lab. My research focuses on comparative grass genomics and the fate of genes following whole genome duplications. | ||
| − | =Contact info= | + | = Contact info = |
| − | + | ||
| − | + | email: <code><br>jschnable (@) berkeley.edu<br><br></code>Physical Address:<code><br>434 Koshland Hall (Mail: 111 Koshland Hall)<br>University of California-Berkeley<br>Berkeley, CA 94720</code> | |
| − | + | ||
| − | *Tang H, Lyons E, Pedersen B, '''Schnable JC''', Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." ''BMC Bioinformatics'' DOI: [http://www.biomedcentral.com/1471-2105/12/102/abstract 10.1186/1471-2105-12-102] | + | = Publications = |
| − | *'''Schnable JC''', Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." ''Frontiers in Plant Science'' DOI: [http://www.frontiersin.org/plant_genetics_and_genomics/10.3389/fpls.2011.00002/abstract 10.3389/fpls.2011.00002] | + | |
| − | *'''Schnable JC''', Freeling M. 2011. "Genes identifed by visible mutant phenotypes show increased bias towards one of two maize subgenomes." ''PLoS One'' DOI: [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017855 10.1371/journal.pone.0017855] | + | [http://www.skraelingmountain.com/ An up to date list] of James Schnable's publications. |
| − | *'''Schnable JC''', Springer NM, Freeling M. 2011. "Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss.". ''PNAS'' DOI: [http://www.pnas.org/content/108/10/4069.abstract 10.1073/pnas.1101368108] | + | |
| − | *Woodhouse MR, '''Schnable JC''', Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. 2010. "Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs." ''PLoS Biology'' DOI:[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000409 10.1371/journal.pbio.1000409] | + | *Tang H, Lyons E, Pedersen B, '''Schnable JC''', Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." ''BMC Bioinformatics'' DOI: [http://www.biomedcentral.com/1471-2105/12/102/abstract 10.1186/1471-2105-12-102] |
| + | *'''Schnable JC''', Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." ''Frontiers in Plant Science'' DOI: [http://www.frontiersin.org/plant_genetics_and_genomics/10.3389/fpls.2011.00002/abstract 10.3389/fpls.2011.00002] | ||
| + | *'''Schnable JC''', Freeling M. 2011. "Genes identifed by visible mutant phenotypes show increased bias towards one of two maize subgenomes." ''PLoS One'' DOI: [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0017855 10.1371/journal.pone.0017855] | ||
| + | *'''Schnable JC''', Springer NM, Freeling M. 2011. "Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss.". ''PNAS'' DOI: [http://www.pnas.org/content/108/10/4069.abstract 10.1073/pnas.1101368108] | ||
| + | *Woodhouse MR*, '''Schnable JC*''', Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. 2010. "Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs." ''PLoS Biology'' DOI:[http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1000409 10.1371/journal.pbio.1000409] | ||
*The International Brachypodium Initiative. 2010. "Genome sequencing and analysis of the model grass Brachypodium distachyon." ''Nature'' DOI: [http://dx.doi.org/10.1038/nature08747 10.1038/nature08747] | *The International Brachypodium Initiative. 2010. "Genome sequencing and analysis of the model grass Brachypodium distachyon." ''Nature'' DOI: [http://dx.doi.org/10.1038/nature08747 10.1038/nature08747] | ||
| − | *Authors Contributed Equally | + | **Authors Contributed Equally |
| + | |||
| + | = Education = | ||
| − | |||
*2004-2008 B.A. Cornell University. Major: Biology with focuses in Genetics and Plant Biology. | *2004-2008 B.A. Cornell University. Major: Biology with focuses in Genetics and Plant Biology. | ||
*2008-present Graduate Work. University of California-Berkeley, 2008-present. Department of Plant and Microbial Biology. | *2008-present Graduate Work. University of California-Berkeley, 2008-present. Department of Plant and Microbial Biology. | ||
Revision as of 15:36, 16 July 2011
James Schnable
Graduate student in the department of Plant and Microbial Biology at UC-Berkeley and a member of the Freeling lab. My research focuses on comparative grass genomics and the fate of genes following whole genome duplications.
Contact info
email:
jschnable (@) berkeley.edu
434 Koshland Hall (Mail: 111 Koshland Hall)
University of California-Berkeley
Berkeley, CA 94720
Publications
An up to date list of James Schnable's publications.
- Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." BMC Bioinformatics DOI: 10.1186/1471-2105-12-102
- Schnable JC, Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." Frontiers in Plant Science DOI: 10.3389/fpls.2011.00002
- Schnable JC, Freeling M. 2011. "Genes identifed by visible mutant phenotypes show increased bias towards one of two maize subgenomes." PLoS One DOI: 10.1371/journal.pone.0017855
- Schnable JC, Springer NM, Freeling M. 2011. "Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss.". PNAS DOI: 10.1073/pnas.1101368108
- Woodhouse MR*, Schnable JC*, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. 2010. "Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs." PLoS Biology DOI:10.1371/journal.pbio.1000409
- The International Brachypodium Initiative. 2010. "Genome sequencing and analysis of the model grass Brachypodium distachyon." Nature DOI: 10.1038/nature08747
- Authors Contributed Equally
Education
- 2004-2008 B.A. Cornell University. Major: Biology with focuses in Genetics and Plant Biology.
- 2008-present Graduate Work. University of California-Berkeley, 2008-present. Department of Plant and Microbial Biology.
