Difference between revisions of "User:Jschnable"
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*Eichten SR,* Swanson-Wagner RA,* '''Schnable JC''', Waters AJ, Hermanson PJ, Liu S, Yeh C, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. 2011. Heritable epigenetic variation among maize inbreds. ''PLoS Genetics'' DOI: [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002372 10.1371/journal.pgen.1002372] | *Eichten SR,* Swanson-Wagner RA,* '''Schnable JC''', Waters AJ, Hermanson PJ, Liu S, Yeh C, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. 2011. Heritable epigenetic variation among maize inbreds. ''PLoS Genetics'' DOI: [http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002372 10.1371/journal.pgen.1002372] | ||
| − | *Schnable JC, Lyons E. 2011. Comparative genomics with maize and other grass: from genes to genomes. Maydica 56(2) 183-200 | + | *'''Schnable JC''', Lyons E. 2011. Comparative genomics with maize and other grass: from genes to genomes. Maydica 56(2) 183-200 |
*Tang H, Lyons E, Pedersen B, '''Schnable JC''', Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." ''BMC Bioinformatics'' DOI: [http://www.biomedcentral.com/1471-2105/12/102/abstract 10.1186/1471-2105-12-102] | *Tang H, Lyons E, Pedersen B, '''Schnable JC''', Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." ''BMC Bioinformatics'' DOI: [http://www.biomedcentral.com/1471-2105/12/102/abstract 10.1186/1471-2105-12-102] | ||
*'''Schnable JC''', Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." ''Frontiers in Plant Science'' DOI: [http://www.frontiersin.org/plant_genetics_and_genomics/10.3389/fpls.2011.00002/abstract 10.3389/fpls.2011.00002] | *'''Schnable JC''', Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." ''Frontiers in Plant Science'' DOI: [http://www.frontiersin.org/plant_genetics_and_genomics/10.3389/fpls.2011.00002/abstract 10.3389/fpls.2011.00002] | ||
Revision as of 22:39, 21 November 2011
James Schnable
I'm a graduate student in the department of Plant and Microbial Biology at UC-Berkeley and a member of the Freeling lab. My research focuses on comparative grass genomics and the fate of genes following whole genome duplications.
Here at CoGePedia I maintain the Sequenced plant genomes and Classical Maize Genes resources. It's always a struggle to keep them up to date, so please don't hesitate to let me know if you find omissions in either list.
Contact info
email:
jschnable (@) berkeley.edu
434 Koshland Hall (Mail: 111 Koshland Hall)
University of California-Berkeley
Berkeley, CA 94720
Publications
An automatically updated list of James Schnable's publications (Google Scholar profile).
- Eichten SR,* Swanson-Wagner RA,* Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh C, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. 2011. Heritable epigenetic variation among maize inbreds. PLoS Genetics DOI: 10.1371/journal.pgen.1002372
- Schnable JC, Lyons E. 2011. Comparative genomics with maize and other grass: from genes to genomes. Maydica 56(2) 183-200
- Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M. 2011. "Screening synteny blocks in pairwise genome comparisons through integer programming." BMC Bioinformatics DOI: 10.1186/1471-2105-12-102
- Schnable JC, Pedersen BS, Subramaniam S, Freeling M. 2011. "Dose-sensitivity, conserved noncoding sequences and duplicate gene retention through multiple tetraploidies in the grasses." Frontiers in Plant Science DOI: 10.3389/fpls.2011.00002
- Schnable JC, Freeling M. 2011. "Genes identifed by visible mutant phenotypes show increased bias towards one of two maize subgenomes." PLoS One DOI: 10.1371/journal.pone.0017855
- Schnable JC, Springer NM, Freeling M. 2011. "Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss.". PNAS DOI: 10.1073/pnas.1101368108
- Woodhouse MR*, Schnable JC*, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. 2010. "Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs." PLoS Biology DOI:10.1371/journal.pbio.1000409
- The International Brachypodium Initiative. 2010. "Genome sequencing and analysis of the model grass Brachypodium distachyon." Nature DOI: 10.1038/nature08747
[1](*) Authors Contributed Equally
Education
- 2004-2008 B.A. Cornell University. Major: Biology with focuses in Genetics and Plant Biology.
- 2008-present PhD (in progress) University of California-Berkeley. Department of Plant and Microbial Biology.
