Difference between revisions of "Carnivorous plants"
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(→Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions) |
(→Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions) |
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| − | ==Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions== | + | ==Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: [[fractionation]] of gene content in two distinct Utricularia genomic regions== |
| − | [[File:Screen shot 2012-02-01 at 2.48.16 PM.png|thumb|center|600px|GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation. Results may be regenerated at http://genomevolution.org/r/4gi8]] | + | [[File:Screen shot 2012-02-01 at 2.48.16 PM.png|thumb|center|600px|GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive [[fractionation]] and [[intercalated synteny]]. Results may be regenerated at http://genomevolution.org/r/4gi8]] |
[[File:Screen Shot 2012-02-06 at 6.26.10 AM2.png|thumb|center|600px|GEvo analysis of [[pseudoassembly]] Utricularia to tomato. The pseudoassembly of Utricularia is based on the [[syntenic path assembly]] to tomato. As such, duplicated utricularia genomic regions will appear next to each other. If Utricularia has had an independent [[WGD]] followed by fractionation, these neighboring pieces will show [[intercalated synteny]] to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c]] | [[File:Screen Shot 2012-02-06 at 6.26.10 AM2.png|thumb|center|600px|GEvo analysis of [[pseudoassembly]] Utricularia to tomato. The pseudoassembly of Utricularia is based on the [[syntenic path assembly]] to tomato. As such, duplicated utricularia genomic regions will appear next to each other. If Utricularia has had an independent [[WGD]] followed by fractionation, these neighboring pieces will show [[intercalated synteny]] to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c]] | ||
Revision as of 07:41, 6 February 2012
Contents
- 1 Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions
- 2 Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
- 3 Synteny between Genlisea and Utricularia
- 4 Syntenic dotplots
- 5 Phylogeny
Evidence that Utricularia has had a whole genome duplication following its divergence with tomato: fractionation of gene content in two distinct Utricularia genomic regions
GEvo analylsis of 2xUtricularia regions to 1xTomato regions. The Utricularia regions are syntenic to the same reigon of tomato and show extensive fractionation and intercalated synteny. Results may be regenerated at http://genomevolution.org/r/4gi8
GEvo analysis of pseudoassembly Utricularia to tomato. The pseudoassembly of Utricularia is based on the syntenic path assembly to tomato. As such, duplicated utricularia genomic regions will appear next to each other. If Utricularia has had an independent WGD followed by fractionation, these neighboring pieces will show intercalated synteny to tomato. Results may be regenerated at http://genomevolution.org/r/4h2c
Differential fractionation of Utricularia and Genlisea (may be due to the polyploidy noted above)
GEvo analysis of Genlisea and Utricularia to the orthologous outgroup region of Mimulus. Genlisea and Utricularia demostrate a pattern of differential fractionation. Results can be regenerated at: http://genomevolution.org/r/4gbw
Synteny between Genlisea and Utricularia
- http://genomevolution.org/r/4gta
- http://genomevolution.org/r/4gte
- http://genomevolution.org/r/4gtg
- http://genomevolution.org/r/4gth
- http://genomevolution.org/r/4gtj
- http://genomevolution.org/r/4gtk
- http://genomevolution.org/r/4gyi
- http://genomevolution.org/r/4gyg
- http://genomevolution.org/r/4gye
- http://genomevolution.org/r/4gyc
- http://genomevolution.org/r/4gya
- http://genomevolution.org/r/4gy8
- http://genomevolution.org/r/4gy6
Syntenic dotplots
Phylogeny
polyploidy events
