Difference between revisions of "Twig2Genome"
From CoGepedia
(Created page with '==Objective== Write a paper on the twig2genome concept: rapidly creating a usable low-quality draft assembly from a complex plant genome. ==Methods== ===Genome assembly=== Cel...') |
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| Line 7: | Line 7: | ||
Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855 | Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855 | ||
| − | ==Syntenic path | + | ==Syntenic path assembly (SPA)== |
* To peach: | * To peach: | ||
** SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq | ** SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq | ||
** SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l | ** SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l | ||
| + | ** Link to SPA: http://data.iplantcollaborative.org/quickshare/6529f555a60aed63/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz | ||
| + | ***Note: Reference and Pseudogenome labels are switched in log and AGP files. | ||
Revision as of 08:13, 11 February 2012
Objective
Write a paper on the twig2genome concept: rapidly creating a usable low-quality draft assembly from a complex plant genome.
Methods
Genome assembly
Celera Assembly (Haibao Tang): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=16855
Syntenic path assembly (SPA)
- To peach:
- SynMap visualization with unassembled contigs: http://genomevolution.org/r/4hzq
- SynMap visualization without unassembled contigs: http://genomevolution.org/r/4i6l
- Link to SPA: http://data.iplantcollaborative.org/quickshare/6529f555a60aed63/creosote-CA-peach-SPA-10-20-2-8400-16855.tar.gz
- Note: Reference and Pseudogenome labels are switched in log and AGP files.
