Difference between revisions of "ChIP-seq Analysis Pipeline"
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CoGe can analyze [https://en.wikipedia.org/wiki/ChIP-sequencing chromatin immunoprecipitation sequence (ChIP-seq)] using the software package [http://homer.salk.edu/homer/ Homer]. | CoGe can analyze [https://en.wikipedia.org/wiki/ChIP-sequencing chromatin immunoprecipitation sequence (ChIP-seq)] using the software package [http://homer.salk.edu/homer/ Homer]. | ||
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| + | See the LoadExperiment tool to use the new pipeline. Select FASTQ input files to make the pipeline available in the menu. | ||
This analysis pipeline was developed by Xiang Ju (in the lab of [https://www.bio.upenn.edu/people/brian-gregory Brian Gregory at UPenn]). | This analysis pipeline was developed by Xiang Ju (in the lab of [https://www.bio.upenn.edu/people/brian-gregory Brian Gregory at UPenn]). | ||
Revision as of 13:48, 3 March 2016
CoGe can analyze chromatin immunoprecipitation sequence (ChIP-seq) using the software package Homer.
See the LoadExperiment tool to use the new pipeline. Select FASTQ input files to make the pipeline available in the menu.
This analysis pipeline was developed by Xiang Ju (in the lab of Brian Gregory at UPenn).
