Difference between revisions of "ChIP-seq Analysis Pipeline"
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==Inputs== | ==Inputs== | ||
| − | + | Three FASTQ input files are required: | |
| + | * input | ||
| + | * two replicates | ||
==Workflow== | ==Workflow== | ||
==Outputs== | ==Outputs== | ||
Revision as of 15:15, 3 March 2016
CoGe can analyze chromatin immunoprecipitation sequence (ChIP-seq) using the software package Homer.
See the LoadExperiment tool to use the new pipeline.
This analysis pipeline was developed by Xiang Ju (in the lab of Brian Gregory at UPenn).
Inputs
Three FASTQ input files are required:
- input
- two replicates
