Difference between revisions of "Ramosa2 orthologs and CNSs"

Revision as of 17:10, 15 October 2009

GenBank Accession NM_001138446 from NCBI

Configuring CoGeBlast to search multiple grass genomes

HSP Table from CoGeBlast. HSPs are commonly known as "Blast Hits"

Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box

GEvo result of ra2 in syntenic region between Brachypodium and Rice

Checking a direct sequence submission in GEvo

Selecting the reverse complement option for a sequence submission in GEvo

Identifying a sequence that needs to be reverse complemented in GEvo

Option increase up and downstream sequence to all sequence submissions

Changing the amount of up and downstream sequence for a sequence submission in GEvo

Identifying conserved sequence around ramora2 in GEvo

Selecting blastn in GEvo

Using blastn in GEvo to identify conserved noncoding sequences for ramora2 in grasses

Setting HSP limits in GEvo

@@ Line 10: / Line 10: @@
 [[Image:GEvo-change-region-extent.png|thumb|600px|right|Changing the amount of up and downstream sequence for a sequence submission in GEvo]]
 [[Image:GEvo-identifying-conserved-sequence-ra2.png|thumb|600px|right|Identifying conserved sequence around ramora2 in GEvo]]
-[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
+[[Image:GEvo-blastn.png|thumb|600px|right|Selecting blastn in GEvo]]
-[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
+[[Image:GEvo-ra2-cns-discovery.png|thumb|600px|right|Using blastn in GEvo to identify conserved noncoding sequences for ramora2 in grasses]]
-[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
+[[Image:GEvo-image-parameters-hsp-limit.png|thumb|600px|right|Setting HSP limits in GEvo]]