Potato-Utricularia-Genlisea Syntenic Depth: Difference between revisions
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[[Syntenic depth]] measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with [[Syntenic dotplots]]. | [[Syntenic depth]] measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with [[Syntenic dotplots]]. | ||
==4 genes in | ==4 genes in 80== | ||
Syntenic Depth: http://genomevolution.org/r/4rl2 | Syntenic Depth: http://genomevolution.org/r/4rl2 | ||
Genlisea aurea | Genlisea aurea | ||
<pre>Depth 1 | <pre>Depth 1 2056 of 2820 72.91% | ||
Depth 2 | Depth 2 405 of 2820 14.36% | ||
Depth 3 | Depth 3 346 of 2820 12.27% | ||
Depth 4 8 of 2820 0.28% | |||
Depth 5 5 of 2820 0.18%</pre> | |||
Utricularia gibba | Utricularia gibba | ||
<pre>Depth 1 | <pre>Depth 1 11526 of 27145 42.46% | ||
Depth 2 | Depth 2 6849 of 27145 25.23% | ||
Depth 3 | Depth 3 4346 of 27145 16.01% | ||
Depth 4 | Depth 4 2456 of 27145 9.05% | ||
Depth 5 | Depth 5 1254 of 27145 4.62% | ||
Depth | Depth 6 534 of 27145 1.97% | ||
Depth | Depth 7 138 of 27145 0.51% | ||
Depth 8 28 of 27145 0.10% | |||
Depth 9 8 of 27145 0.03% | |||
Depth 10 4 of 27145 0.01% | |||
Depth 12 1 of 27145 0.00% | |||
Depth 13 1 of 27145 0.00%</pre> | |||
[[Potato-Utricular-Genlisea Syntenic Depth old data]] | [[Potato-Utricular-Genlisea Syntenic Depth old data]] | ||
Latest revision as of 18:41, 4 May 2012
Follow this link for information on Syntenic depth.
Syntenic depth measurements permit classifying the number of whole genome duplications that have happened in one lineage relative to another. Unfortunately, these analyses are not 100% conclusive, but provide supporting evidence, especially when combined with Syntenic dotplots.
4 genes in 80
Syntenic Depth: http://genomevolution.org/r/4rl2
Genlisea aurea
Depth 1 2056 of 2820 72.91% Depth 2 405 of 2820 14.36% Depth 3 346 of 2820 12.27% Depth 4 8 of 2820 0.28% Depth 5 5 of 2820 0.18%
Utricularia gibba
Depth 1 11526 of 27145 42.46% Depth 2 6849 of 27145 25.23% Depth 3 4346 of 27145 16.01% Depth 4 2456 of 27145 9.05% Depth 5 1254 of 27145 4.62% Depth 6 534 of 27145 1.97% Depth 7 138 of 27145 0.51% Depth 8 28 of 27145 0.10% Depth 9 8 of 27145 0.03% Depth 10 4 of 27145 0.01% Depth 12 1 of 27145 0.00% Depth 13 1 of 27145 0.00%