Difference between revisions of "Ramosa2 orthologs and CNSs"

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[[Image:Ra2-CoGeBlast.png|thumb|600px|right|Configuring CoGeBlast to search multiple grass genomes]]
 
[[Image:Ra2-CoGeBlast.png|thumb|600px|right|Configuring CoGeBlast to search multiple grass genomes]]
 
[[Image:CoGeBlast-HSPTable.png|thumb|600px|right|HSP Table from CoGeBlast.  HSPs are commonly known as "Blast Hits"]]
 
[[Image:CoGeBlast-HSPTable.png|thumb|600px|right|HSP Table from CoGeBlast.  HSPs are commonly known as "Blast Hits"]]
[[Image:GEvo-manual-add-sequence.png|thumb|600px|right|Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box]]
 
 
[[Image:GEvo-manual-add-sequence.png|thumb|600px|right|Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box]]
 
[[Image:GEvo-manual-add-sequence.png|thumb|600px|right|Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box]]
 
[[Image:Ra2-GEvo-result.png|thumb|600px|right|GEvo result of ra2 in syntenic region between Brachypodium and Rice]]
 
[[Image:Ra2-GEvo-result.png|thumb|600px|right|GEvo result of ra2 in syntenic region between Brachypodium and Rice]]
 +
[[Image:GEvo-direct-submission-check|thumb|600px|right|Checking a direct sequence submission in GEvo]]
 +
[[Image:GEvo-reverse-complement-option.png|thumb|600px|right|Selecting the reverse complement option for a sequence submission in GEvo]]
 +
[[Image:GEvo-sequence-needs-rc.png|thumb|600px|right|Identifying a sequence that needs to be reverse complemented in GEvo]]
 +
[[Image:GEvo-add-to-all.png|thumb|600px|right|Option increase up and downstream sequence to all sequence submissions]]
 +
[[Image:GEvo-change-region-extent.png|thumb|600px|right|Changing the amount of up and downstream sequence for a sequence submission in GEvo]]
 +
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
 +
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
 +
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]
 +
[[Image:NM_001138446.png|thumb|600px|right|GenBank Accession NM_001138446 from NCBI]]

Revision as of 17:04, 15 October 2009

GenBank Accession NM_001138446 from NCBI
Configuring CoGeBlast to search multiple grass genomes
HSP Table from CoGeBlast. HSPs are commonly known as "Blast Hits"
Manually adding a sequence to a GEvo analysis by pasting in a sequence into the sequence submission box
GEvo result of ra2 in syntenic region between Brachypodium and Rice
File:GEvo-direct-submission-check
Checking a direct sequence submission in GEvo
Selecting the reverse complement option for a sequence submission in GEvo
Identifying a sequence that needs to be reverse complemented in GEvo
Option increase up and downstream sequence to all sequence submissions
Changing the amount of up and downstream sequence for a sequence submission in GEvo
GenBank Accession NM_001138446 from NCBI
GenBank Accession NM_001138446 from NCBI
GenBank Accession NM_001138446 from NCBI
GenBank Accession NM_001138446 from NCBI