Upload log
Below is a list of the most recent file uploads. See the gallery of new files for a more visual overview.
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)- 18:04, 9 April 2010 Jschnable (Talk | contribs) uploaded File:Peachdefault.jpg (If you have a better picture of a peach, please overwrite this image.)
- 14:32, 2 April 2010 Elyons (Talk | contribs) uploaded File:CDSEvo-atpa.png (Screenshot of CDSEvo showing amino acid usage for all CDSs with "ATPA" in their name across all genomes in CoGe. ATPA is one of the highly conserved subunits of ATP synthase. CDSs are binned according to their overall DNA GC content.)
- 14:30, 2 April 2010 Elyons (Talk | contribs) uploaded File:CDSEvo-MG1655.png (Screenshot of CDSEvo showing amino acid usage for all CDSs in Escherichia coli K12 MG1655. CDSs are binned according to their overall DNA GC content.)
- 12:36, 29 March 2010 Elyons (Talk | contribs) uploaded File:Master 7949 2465.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Syntenic dotplot of Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis).)
- 12:34, 29 March 2010 Elyons (Talk | contribs) uploaded File:Plasmodium knowlesi cds gc content histogram.png (Histogram of CDS GC content for Plasmodium knowlesi.)
- 12:31, 29 March 2010 Elyons (Talk | contribs) uploaded File:Plasmodium falciparum cds gc content histogram.png (Histogram of CDS GC content for Plasmodium falciparum)
- 12:28, 29 March 2010 Elyons (Talk | contribs) uploaded File:Plasmodium-codon-substitution-matirx.png (Log-odds score substitution matrix of codons between Plasmodium falciparum (x-axis) and Plasmodium knowlesi (y-axis))
- 15:50, 26 March 2010 Elyons (Talk | contribs) uploaded File:Human-mouse-tandem-gene-duplication.png (GEvo analysis showing a tandem gene duplication in human and mouse. http://genomevolution.org/r/g5)
- 14:48, 26 March 2010 Elyons (Talk | contribs) uploaded File:Master 43 43.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.gene.png (Syntenic dotplot of grape versus itself. Each region of the grape genome is syntenic to two other intragenomic regions. This is evidence that grape is an ancient paleohexaploid. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=43;dsgid2=43;c=4;D=20)
- 14:40, 26 March 2010 Elyons (Talk | contribs) uploaded a new version of File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of poplar against itself. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8154;dsgid2=8154;c=4;D=40;g=20;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
- 14:37, 26 March 2010 Elyons (Talk | contribs) uploaded a new version of File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.hist.png (Histogram of synonymous mutation values of syntenic gene pairs identified within the genome of poplar. The two middle peaks are from its recent whole genome duplication event, and a more ancient paleohexaploidy event which is shared by all eudicots. htt)
- 14:32, 26 March 2010 Elyons (Talk | contribs) uploaded File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.hist.png (Histogram of synonymous mutation values for syntenic gene pairs between poplar and grape. Low values on left, high values on right. The two middle peaks are from the divergence of their lineages and their shared whole genome duplication event (eudicot p)
- 14:26, 26 March 2010 Elyons (Talk | contribs) uploaded File:Master 8154 8154.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of poplar (x-axis) verus grapevine (y-axis). Syntenic gene pairs are colored based on synonymous mutation values. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8154;dsgid2=8154;c=4;D=40;g=20;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1)
- 19:05, 18 March 2010 Elyons (Talk | contribs) uploaded File:Mimulus-Grape-segmental duplication.png (http://tinyurl.com/yc7csa5 Contains the paleohex on both lineages)
- 15:12, 16 March 2010 Elyons (Talk | contribs) uploaded File:Master 7029 7071.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Human-chimp syntenic dotplot. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=7029;dsgid2=7071;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
- 12:19, 16 March 2010 Elyons (Talk | contribs) uploaded File:Phylogeny fr results.png (Final phylogenetic tree generated by phylogeny.fr)
- 12:16, 16 March 2010 Elyons (Talk | contribs) uploaded File:Phylogeny fr Tree rendering.png (Phylogeny.fr automatically rendering a phylogenentic tree using TreeDyn.)
- 12:12, 16 March 2010 Elyons (Talk | contribs) uploaded File:Phylogeny fr Muscle MSA.png (Phylogeny.fr automatically running MUSCLE for a multiple sequence alignment.)
- 12:09, 16 March 2010 Elyons (Talk | contribs) uploaded File:Phylogeny fr PhyML.png (Phylogeny.fr's one-click phylogenetics running PhyML maximum likelihood tree reconstruction.)
- 12:05, 16 March 2010 Elyons (Talk | contribs) uploaded File:FastaView-At1g02120-bad-translations.png (Protein translations in FastaView where all translation frames are shown. This is due to a protein not having an "M" in the start position and a stop in the end position. These sequences need to be removed before sending to phylogeny.fr)
- 12:02, 16 March 2010 Elyons (Talk | contribs) uploaded File:FastaView-At1g02120-homologs.png (Viewing protein sequences of identified homologs of At1g02120)
- 11:57, 16 March 2010 Elyons (Talk | contribs) uploaded File:CoGeBlast-At1g02120-hitselect.png (Selecting homologs in CoGeBlast to send to FastaView)
- 11:55, 16 March 2010 Elyons (Talk | contribs) uploaded File:CoGeBlast-At1g02120-eval.png (Evaluating a blast hit in Arabidopsis lyrata to Arabidopsis thaliana's At1g02120.)
- 11:52, 16 March 2010 Elyons (Talk | contribs) uploaded File:CoGeBlast-At1g02120.png (Searching for At1g02120 in CoGeBlast against plant genomes. )
- 11:49, 16 March 2010 Elyons (Talk | contribs) uploaded File:FeatView-At1g02120.png (FeatView search for At1g02120)
- 21:19, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Totalsequencedtree.png (As of March 13th, a phylogenetic tree of all species with sequenced genomes. )
- 15:10, 13 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:Ricedefault.jpg (Rice field and rice head. Both public domain. Please update if you have something better.)
- 15:07, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Ricedefault.jpg (Public domain rice field image. Feel free to replace if you have a better image.)
- 01:08, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Brachy Pic.JPG (Image courtesy of Devin O'Connor.)
- 00:41, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Soybeandefault.jpg (Default soybean image. If you have a better one, please replace. (From the USDA and in the public domain))
- 00:20, 13 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:Defaultcucumber.jpg
- 00:18, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Defaultcucumber.jpg (Cucumber image courtesy of the USDA. If you have a better one please upload.)
- 00:12, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Papayadefault.jpg (default papaya image (public domain image from wikimedia), if you have a better image, please replace.)
- 00:03, 13 March 2010 Jschnable (Talk | contribs) uploaded File:Poplarsdefault.jpg (Public domain image from wikimedia. Default poplar imagine, if you have a better one please replace.)
- 23:55, 12 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:Sorghumdefault.jpg (Default sorghum picture. If you have a better one, please update.)
- 23:52, 12 March 2010 Jschnable (Talk | contribs) uploaded File:Sorghumdefault.jpg (Default sorghum picture. If you have a better one, please update.)
- 23:38, 12 March 2010 Jschnable (Talk | contribs) uploaded File:Maizedefault.jpg (Default picture of maize/corn. If you have a better one, please replace.)
- 23:33, 12 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:Arabidopsisdefault.jpg
- 23:32, 12 March 2010 Jschnable (Talk | contribs) uploaded File:Arabidopsisdefault.jpg (Picture of Arabidopsis thaliana. If you have a better one, please upgrade!)
- 23:25, 12 March 2010 Jschnable (Talk | contribs) uploaded File:Grapedefault.jpg (Picture of grapes. Overwrite if you have a better one.)
- 17:30, 12 March 2010 Jschnable (Talk | contribs) uploaded File:WGDsinsequencedgenomes.png (Phylogenetic tree of sequenced genomes (as of early 2010) with whole genome duplications marked.)
- 21:05, 11 March 2010 Elyons (Talk | contribs) uploaded a new version of File:Mimulus-vitis-segmental-evidence.png (grape regions are from paleohex. Pair of mimulus regions are fractionated to one of the grape regions. http://tinyurl.com/yezkzdv)
- 21:04, 11 March 2010 Elyons (Talk | contribs) uploaded File:Mimulus-vitis-segmental-evidence.png (The grape regions are derived from the paleo hex.)
- 17:33, 11 March 2010 Elyons (Talk | contribs) uploaded File:Pan-grass-genome-tree.png (Genome phylogeny of 4 grass taxa with sequenced genomes. Red stars indicated whole genome duplication events. Due to a pre-grass and maize specific whole genome duplication, there are 10 effective genomes represented.)
- 17:30, 11 March 2010 Elyons (Talk | contribs) uploaded File:Pan-grass-species-tree.png (Phylogeny of 4 grass taxa with sequenced genomes. Red stars indicated whole genome duplication events.)
- 17:59, 8 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:C1pl1.png
- 17:58, 8 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:C1pl1.png
- 15:29, 8 March 2010 Jschnable (Talk | contribs) uploaded a new version of File:C1pl1.png
- 15:26, 8 March 2010 Jschnable (Talk | contribs) uploaded File:C1pl1.png
- 14:35, 8 March 2010 Jschnable (Talk | contribs) uploaded File:Pericarps.png