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Below is a list of the most recent file uploads. See the gallery of new files for a more visual overview.
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)- 13:22, 12 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-AcMNPV-TnSNPV-XnGV.png (GEvo comparison of three baculoviruses: AcMNPV, TnMNPV, and XnGV. http://genomevolution.org/r/7r8)
- 18:09, 11 June 2010 Elyons (Talk | contribs) uploaded a new version of File:GEvo-Ac-Px-Ro-MNPV.png
- 18:06, 11 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-Ac-Px-Ro-MNPV.png (GEvo comparison of three baculoviruses: AcMNPV, PxMNPV, and RoMNPV. http://genomevolution.org/r/7qj)
- 17:52, 11 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-9-baculoviruses-orientation.png (GEvo comparison of 9 baculoviruses. AcMNPV is at the top and is the reference genome. Two genomes have been reverse complemented. http://genomevolution.org/r/7qi)
- 17:41, 11 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-9-baculoviruses.png (GEvo comparison of 9 baculoviruses. AcMNPV is at the top and is the reference genome. http://genomevolution.org/r/7qg)
- 16:58, 11 June 2010 Elyons (Talk | contribs) uploaded File:Baculovirus phylogeny marked.png (phylogeny generated by phylogeny.fr. Protein sequences sent by FastaView: http://genomevolution.org/r/6yh. Arrows point out strains that were used in a comparison using GEvo (centered off of AcMNPV; green arrow))
- 18:18, 8 June 2010 Bao (Talk | contribs) uploaded File:After qa.png (example dot plot after quota-align)
- 18:17, 8 June 2010 Bao (Talk | contribs) uploaded File:Before qa.png (example dot plot before quota-align)
- 14:39, 8 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-Ac-Px-MNPV-closeup3.png (analysis of region present in PxMNPV that is not present in AcMNPV. This is likely a new insertion evidenced by the direct repeats at the ends of the insertion. http://genomevolution.org/r/7cf)
- 14:26, 8 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-Ac-Px-MNPV-closeup2.png (GEvo analysis of region present in PxMNPV that is not present in AcMNPV. This is likely a new insertion evidenced by the direct repeats at the ends of the insertion. http://genomevolution.org/r/7c6)
- 14:12, 8 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-Ac-Px-MNPV-closeup.png (GEvo analysis around a region not present in PxMNPV and present in AcMNPV http://genomevolution.org/r/7by)
- 20:14, 6 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-AcMNPV-vs-PxMNPV-complete.png (GEvo analysis of the complete genomes of AcMNPV and PxMNPV. Results can be regenerated at http://genomevolution.org/r/729)
- 20:03, 6 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-AcMNPV-vs-PxMNPV-repeat-region.png (GEvo analysis of a repeat region shared at a syntenic position between AcMNPV and PxMNPV. http://genomevolution.org/r/728)
- 19:01, 6 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-AcMNPV-vs-PxMNPV.png (Gevo analysis of AcMNPV and PxMNPV around the polyhedrin gene. http://genomevolution.org/r/725)
- 13:03, 3 June 2010 Elyons (Talk | contribs) uploaded File:GEvo-Gaeumannomyces-v-Magnapothe.png (GEvo analysis of Magnaporthe poae ATCC 64411 versus Gaeumannomyces graminis var. tritici showing an inversion. Orange regions in the background of each panel are unsequenced regions; pink blocks and wedges are regions with sequence similarity. http://ge)
- 12:58, 3 June 2010 Elyons (Talk | contribs) uploaded File:Master 9197 9195.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.png (Syntenic dotplot between Magnaporthe poae ATCC 64411 (y-axis) versus Gaeumannomyces graminis var. tritici (x-axis): http://genomevolution.org/CoGe/SynMap.pl?dsgid1=9197;dsgid2=9195;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=gene)
- 10:52, 3 June 2010 Elyons (Talk | contribs) uploaded File:OrganismView Features.png (Screen-shot of displaying a list of genomic features in OrgnaismView)
- 10:46, 3 June 2010 Elyons (Talk | contribs) uploaded File:Polyhedrin blast hit.png (Blast (tblastn) hit between Autographa californica's polyhedrin protein and Adoxophyes honmai NPV)
- 10:41, 3 June 2010 Elyons (Talk | contribs) uploaded File:Baculovirus-phylogeny.png (Baculovirus phylogeny generated by phylogeny.fr. Protein sequences sent by FastaView: http://genomevolution.org/r/6yh)
- 13:20, 17 May 2010 Krdeleon (Talk | contribs) uploaded File:Flanking gene method2.png
- 16:52, 7 May 2010 Elyons (Talk | contribs) uploaded File:Os-Sb-CNS-rich.png (http://genomevolution.org/r/4pk)
- 21:38, 3 May 2010 Elyons (Talk | contribs) uploaded a new version of File:8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords.3-3.w800.ct inv.png (Syntenic dotplot of maize B73 chromosome 3 between refgen version 1 and version 2. Syntenic gene-pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Note the large inversion near the middle (blue line) and many sma)
- 21:37, 3 May 2010 Elyons (Talk | contribs) uploaded a new version of File:Master 8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w1200.png (Maize B73 refgen version 1 (x-axis) and version 2 (y-axis). Version 1 has gene models and version 2 is using only genomic sequence. Syntenic pairs (dots) are colored green and blue if in the same or opposite orientation respectively: http://genomevolution)
- 10:14, 3 May 2010 Elyons (Talk | contribs) uploaded File:GEvo analysis of maize B73 refgen v1 v2.png (GEvo analysis of 1MB of chromosome 3 from maize between refgen version 1 and 2. Version 1 has gene models and non-CDS sequences masked (purple). Note the sets of genes that have been reoriented in version 2. http://genomevolution.org/r/4du)
- 10:09, 3 May 2010 Elyons (Talk | contribs) uploaded File:8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords.3-3.w800.ct inv.png (Syntenic dotplot of maize B73 chromosome 3 between refgen version 1 and version 2. Syntenic gene-pairs (dots) are colored green and blue if in the same or opposite orientation respectively. Note the large inversion near the middle (blue line) and many s)
- 10:03, 3 May 2010 Elyons (Talk | contribs) uploaded File:Master 8082 9106.CDS-genomic.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w1200.png (Maize B73 refgen version 1 (x-axis) and version 2 (y-axis). Version 1 has gene models and version 2 is using only genomic sequence. Syntenic pairs (dots) are colored green and blue if in the same or opposite orientation respectively: http://genomevoluti)
- 14:55, 29 April 2010 Elyons (Talk | contribs) uploaded File:Specifying-syntenic-path-assembly.png (Screen-shot from SynMap show to specify the syntenic path assembly option to order contigs based on their syntenic position to a reference genome. This image also shows the "don't show contigs without assembly" option selected.)
- 14:08, 29 April 2010 Elyons (Talk | contribs) uploaded File:Master 9092 43.genomic-CDS.blastn.dag.go c4 D100 g50 A5.aligncoords.gcoords ct0.w2000.ass2.png (Syntenic comparison between grape (y-axis) and potato (x-axis) using syntenic path assembly in SynMap. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=43;dsgid2=9092;c=4;D=100;g=50;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=2;sp=2;do1=1;do2=1;do=40;dt=geneorder)
- 14:06, 29 April 2010 Elyons (Talk | contribs) uploaded File:Master 9092 43.genomic-CDS.blastn.dag.go c4 D100 g50 A5.aligncoords.gcoords ct0.w2000.png (Syntenic comparison between grape (y-axis) and potato (x-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=43;dsgid2=9092;c=4;D=100;g=50;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=2;do1=1;do2=1;do=40;dt=geneorder)
- 14:16, 27 April 2010 Elyons (Talk | contribs) uploaded File:Master 7146 9105.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.gene.png (Syntenic dotplot of Aspergillus flavus versus a minimized genome consisting of only genomic regions containing metabolic gene clusters. Axis metrics in gene units (not nucleotides). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=7146;dsgid2=9105;c=4;D=2)
- 14:06, 27 April 2010 Elyons (Talk | contribs) uploaded File:Master 7146 9105.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.png (Syntenic dotplot of Aspergillus flavus versus a minimized genome consisting of only genomic regions containing metabolic gene clusters. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=7146;dsgid2=9105;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1)
- 19:51, 22 April 2010 Elyons (Talk | contribs) uploaded File:Aspergillus cluster 48.png (GEvo syntenic analysis of metabolic gene cluster 48 between Aspergillus flavus and oryzae. http://genomevolution.org/r/3xq)
- 10:30, 20 April 2010 Elyons (Talk | contribs) uploaded File:Flanking gene method.png (Flanking gene method figure from GEvo)
- 13:21, 16 April 2010 Elyons (Talk | contribs) uploaded File:GEvo-Peach-v-Grape.png (GEvo analysis of 400kb of syntenic regions from the genomes of peach and grape. http://genomevolution.org/r/3hu)
- 09:55, 16 April 2010 Elyons (Talk | contribs) uploaded File:Master 7043 9048.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.gcoords ct0.w2000.gene.png (Syntenic dotplot between Arabidopsis thaliana (x-axis) and Vitis viniera (y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=9048;dsgid2=7043;c=4;D=40;g=20;A=5;Dm=;gm=;w=2000;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;am=g)
- 09:50, 16 April 2010 Elyons (Talk | contribs) uploaded File:Master 7043 8400.CDS-CDS.blastn.dag.go c4 D40 g20 A5.aligncoords.Dm0.ma1.gcoords ct0.w2000.gene.png (Syntenic dotplot of Arabidopsis thaliana (x-axis) versus Prunus persica (Peach tree; y-axis). http://www.genomevolution.org/CoGe/SynMap.pl?dsgid1=8400;dsgid2=7043;c=4;D=40;g=20;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;am=g)
- 23:39, 12 April 2010 Elyons (Talk | contribs) uploaded File:Master 3419 3420.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ctinv.w500.png (Syntenic dotplot of Archaeas Thermoplasma acidophilum strain DSM 1728 (x-axis) and Thermoplasma volcanium strain GSS1 (y-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=3419;dsgid2=3420;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;d)
- 22:51, 12 April 2010 Elyons (Talk | contribs) uploaded File:Master 7596 9084.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ass.png (Syntenic dotplot of Magnaporthe grisea/oryzae version 5 versus version 6. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=7596;dsgid2=9084;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;sp=1;do1=1;do2=1;do=40;dt=geneorder )
- 22:09, 12 April 2010 Elyons (Talk | contribs) uploaded File:Master 8171 9084.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.png (Syntenic dotplot of: Aspergillus oryzae strain RIB 40 (x-axis) versus Magnaporthe oryzae (rice blast fungus; y-axis). No discernible syntenic regions are detected. http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8171;dsgid2=9084;c=4;D=20;g=10;A=5;)
- 22:07, 12 April 2010 Elyons (Talk | contribs) uploaded File:Aspergillua-oryzae-amino-acid-usage-table.png (Aspergillus oryzae amino acid usage table for all protein coding sequences. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171)
- 22:05, 12 April 2010 Elyons (Talk | contribs) uploaded File:Aspergillua-oryzae-codon-usage-table.png (Aspergillua oryzae codon usage table for all protein coding sequences. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
- 22:02, 12 April 2010 Elyons (Talk | contribs) uploaded File:42188 42187 42186 42185 42184 42183 42182 42181 42180 42179 42178 42177 42176 42175 42174 42173 42172 42171 42170 42169 42168 42167 42166 42165 42164 42163 42162 wobble gc.png (Aspergillus oryzae strain RIB 40 protein coding sequence GC3 (codon wobble position) content histogram. Counts are per sequences and binned according to the GC content of their GC3 codon wobble position. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.p)
- 22:01, 12 April 2010 Elyons (Talk | contribs) uploaded File:42188 42187 42186 42185 42184 42183 42182 42181 42180 42179 42178 42177 42176 42175 42174 42173 42172 42171 42170 42169 42168 42167 42166 42165 42164 42163 42162 min CDS gc.png (Aspergillus oryzae strain RIB 40 protein coding sequence GC content histogram. Counts are per sequences and binned according to their GC content. http://synteny.cnr.berkeley.edu/CoGe/OrganismView.pl?dsgid=8171)
- 21:39, 12 April 2010 Elyons (Talk | contribs) uploaded File:Dotplot Aspergillus-oryzae versus flavus.png (Syntenic doplot of two Asptergillus species, oryzae and flavus. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8171;dsgid2=7146;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
- 10:27, 11 April 2010 Elyons (Talk | contribs) uploaded File:Plant-Paleotetraploidy-Events.png (Placement of paleopolyploidy events in the angiosperm lineage. Figure generated by Michael Freeling and used with his permission.)
- 10:18, 10 April 2010 Elyons (Talk | contribs) uploaded File:Syntenic dotplot grape version 1 versus v2.png (Syntenic dotplot of Vitis vinifera (grapevine) version 2 (x-axis) versus version 1 (y-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=9048;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=0;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder)
- 20:13, 9 April 2010 Elyons (Talk | contribs) uploaded File:Syntenic dotplot medicago truncatula v2 vs v3.png (Syntenic dotplot of Medicago truncatual version 3 (x-axis) versus version 2 (y-axis). http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8976;dsgid2=1635;c=4;D=20;g=10;A=5;Dm=;gm=;w=0;b=1;ft1=1;ft2=1;do1=1;do2=1;do=40;dt=geneorder;ct=inv)
- 19:10, 9 April 2010 Elyons (Talk | contribs) uploaded File:Grapevine-peach K2 historgram.png (Histogram of Ks values for syntenic gene pairs identified between grapevine and peach tree. http://genomevolution.org/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
- 18:57, 9 April 2010 Elyons (Talk | contribs) uploaded File:Syntenic dotplot Prunus persica peach versus Vitis vinifera grapevine.png (Syntenic dotplot of Prunus persica (peach; x-axis) and Vitis vinifera (grapevine; y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)
- 18:55, 9 April 2010 Elyons (Talk | contribs) uploaded File:Master 8400 43.CDS-CDS.blastn.dag.go c4 D20 g10 A5.aligncoords.Dm0.ma1.gcoords ct0.w2000.gene.ks.png (Syntenic dotplot of Prunus persica (peach; x-axis) and Vitis vinifera (grapevine; y-axis). http://synteny.cnr.berkeley.edu/CoGe/SynMap.pl?dsgid1=8400;dsgid2=43;c=4;D=20;g=10;A=5;Dm=0;gm=;w=0;b=1;ft1=1;ft2=1;ma=1;do1=1;do2=1;do=40;dt=geneorder;ks=1;am=g)