Upload log
Below is a list of the most recent file uploads. See the gallery of new files for a more visual overview.
(newest | oldest) View (newer 50 | older 50) (20 | 50 | 100 | 250 | 500)- 20:01, 26 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-26 at 7.29.40 PM.png (SynMap option to sort chromosomes by name in dotplot.)
- 19:57, 26 February 2011 Elyons (Talk | contribs) uploaded File:Cat-Leo.jpg (Cat. Brown tabby. Obvious vertical and horizontal orientation problems. )
- 19:34, 26 February 2011 Elyons (Talk | contribs) uploaded File:Dog-Friday.jpg (Dog. Mutt. Obvious genetic manipulations due to human selection.)
- 19:21, 19 February 2011 Elyons (Talk | contribs) uploaded File:800px-Grosser Panda.JPG (Giant Panda)
- 19:20, 19 February 2011 Elyons (Talk | contribs) uploaded File:YellowLabradorLooking new.jpg (Yellow Lab (dog))
- 18:59, 19 February 2011 Elyons (Talk | contribs) uploaded File:800px-Fugu in Tank.jpg (Takifugu rubripes (torafugu))
- 18:59, 19 February 2011 Elyons (Talk | contribs) uploaded a new version of File:Tetraodon.jpg (Tetraodon nigroviridis (green-spotted freshwater pufferfish))
- 18:57, 19 February 2011 Elyons (Talk | contribs) uploaded File:Tetraodon.jpg
- 18:50, 19 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-19 at 6.17.08 PM.png (Syntenic dotplot by SynMap of panda (x-axis) versus dog (y-axis): http://genomevolution.org/r/2kbv)
- 18:42, 19 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-19 at 6.09.11 PM.png (SynMap Syntneic path assembly of WGS giant panda genome to complete dog genome. http://genomevolution.org/r/2kbt)
- 14:32, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.58.23 PM.png (After running a syntenic path assembly in SynMap, there is an option to download the assembled sequence (contigs are joined using 100Ns).)
- 14:27, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.52.19 PM.png (Syntenic dotplot using SynMap between two puffer fish, Takifugu rubripes (x-axis) and Tetraodon nigroviridis (y-axis). Fugu is a WGS assembly. http://genomevolution.org/r/2k7b)
- 14:16, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.41.51 PM.png (Using SynMap's syntenic path assembly between two puffer fish, Takifugu rubripes (x-axis) and Tetraodon nigroviridis (y-axis). Fugu is a WGS assembly, and full syntenic coverage is detectable to Tetraodon. http://genomevolution.org/r/2k79)
- 14:12, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.38.59 PM.png (Selecting Syntenic Path Assembly in SynMap)
- 14:01, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.27.34 PM.png (SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis) using SynMap's Syntenic Path Assembly to order contigs: http://genomevolution.org/r/2k71)
- 13:58, 18 February 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-02-18 at 1.24.54 PM.png (SynMap analysis of a WGS assembly of a strain of E. coli K12 (y-axis) to a reference assembly (x-axis): http://genomevolution.org/r/2k70)
- 15:25, 4 February 2011 Elyons (Talk | contribs) uploaded File:Master 8400 10997.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.cs1.nsd.hist.png (Histogram of synonymous mutation changes between syntenic gene pairs of chocolate and peach. Generated by SynMap: http://genomevolution.org/r/2i7f)
- 15:23, 4 February 2011 Elyons (Talk | contribs) uploaded File:Master 8400 10997.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.ks.cs1.nsd.png (Syntenic dotplot between Prunus persica (peach; x-axis) and Theobroma cacao (chocolate; y-axis). Gene-pairs are colored based on evolutionary distances. http://genomevolution.org/r/2i7f )
- 07:46, 1 February 2011 Elyons (Talk | contribs) uploaded File:Master 3939 3940.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w500.ks.cs1.nsd.png (Syntenic dotplot between Chloroflexus aggregans strain DSM 9485 (x axis) and Chloroflexus aurantiacus strain J-10-fl (y axis) http://genomevolution.org/r/2hu7 . Syntenic gene pairs colored by Ks values.)
- 10:31, 26 January 2011 Elyons (Talk | contribs) uploaded File:Screen shot 2011-01-26 at 9.48.16 AM.png (High-resolution analysis of syntenic regions between Peach (top) and Cacao. http://genomevolution.org/r/2h9t)
- 10:21, 26 January 2011 Elyons (Talk | contribs) uploaded File:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.png (Syntenic dotplot using SynMap of Cacao (y-axis) versus Peach (x-axis). Green are syntenic matches, gray is any match. Results can be regenerated at http://genomevolution.org/r/2h9j)
- 10:10, 26 January 2011 Elyons (Talk | contribs) uploaded File:Master 8400 10997.CDS-genomic.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w2000.cs1.nsd.png (Syntenic dotplot of Cacao (y-axis) versus Peach (x-axis). http://genomevolution.org/r/2h98)
- 15:12, 19 December 2010 Elyons (Talk | contribs) uploaded File:Screen shot 2010-12-19 at 2.20.50 PM.png (GEvo analysis of syntenic regions from Arabidopsis thaliana and Brassica rapa. Since the divergence of these linages, B. rapa has had subsequent triploidy cause each regions from A. thaliana to have 3 orthologous regions in rapa. http://genomevolution.or)
- 18:18, 9 September 2010 Elyons (Talk | contribs) uploaded File:Master 6807 8082.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.gene.ks.hist.png (Histogram of synonymous mutation values generated by SynMap for syntenic genes between maize and sorghum. http://genomevolution.org/r/bay)
- 11:22, 2 September 2010 Elyons (Talk | contribs) uploaded File:10358 9561.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords.1-1.w800.ct inv.png (SynMap syntenic dotplot between Xenorhabdus nematophila strain ATCC 19061 (x-axis) and Yersinia pestis strain Z176003 (y-axis). http://genomevolution.org/r/qsd)
- 13:42, 28 August 2010 Elyons (Talk | contribs) uploaded a new version of File:SynSub data visualization rainbow.png
- 13:40, 28 August 2010 Elyons (Talk | contribs) uploaded a new version of File:SynSub arabidopsis lyrata versus thaliana rainbow.png
- 13:26, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub data visualization RYB.png
- 13:26, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub data visualization rainbow.png
- 13:23, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub arabidopsis lyrata versus thaliana first RYB.png
- 13:22, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub arabidopsis lyrata versus thaliana rainbow.png
- 12:56, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub arabidopsis lyrata versus thaliana first pass.png
- 12:55, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub arabidopsis lyrata versus thaliana refined.png (SynSub arabidopsis lyrata versus thaliana refined)
- 12:50, 28 August 2010 Elyons (Talk | contribs) uploaded a new version of File:SynSub data visualization refined.png
- 12:31, 28 August 2010 Elyons (Talk | contribs) uploaded a new version of File:SynSub data visualization refined.png
- 12:28, 28 August 2010 Elyons (Talk | contribs) uploaded a new version of File:SynSub data visualization fist pass.png
- 11:48, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub data visualization refined.png (Visualization of a codon substitution matrix by SynSub after refining the table and the color gradient.)
- 11:46, 28 August 2010 Elyons (Talk | contribs) uploaded File:SynSub data visualization fist pass.png (First iteration of data visualization of a codon substitution matrix by SynSub )
- 18:33, 25 August 2010 Elyons (Talk | contribs) uploaded File:5251 5249 wobble gc diff.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC content - percent GC content of wobble codon position of protein coding sequence.)
- 18:33, 25 August 2010 Elyons (Talk | contribs) uploaded File:5251 5249 wobble gc.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC in codon wobble position of protein coding sequence.)
- 18:32, 25 August 2010 Elyons (Talk | contribs) uploaded File:5251 5249 min CDS gc.png (Schizosaccharomyces pombe 972h (http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483) histogram of percent GC content of protein coding sequence.)
- 18:27, 25 August 2010 Elyons (Talk | contribs) uploaded File:41589 wobble gc diff.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC content - percent GC content of wobble codon position of protein coding sequence.)
- 18:26, 25 August 2010 Elyons (Talk | contribs) uploaded File:41589 min CDS gc.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC content of protein coding sequence.)
- 18:26, 25 August 2010 Elyons (Talk | contribs) uploaded File:41589 wobble gc.png (Schizosaccharomyces japonicus strain yFS275 (http://genomevolution.org/CoGe/OrganismView.pl?oid=30548) histogram of percent GC in codon wobble position of protein coding sequence.)
- 18:12, 25 August 2010 Elyons (Talk | contribs) uploaded File:Schizosaccharomyces pombe 972h amino acid usage table.png (Schizosaccharomyces pombe 972h amino acid usage table. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483)
- 18:11, 25 August 2010 Elyons (Talk | contribs) uploaded File:Schizosaccharomyces japonicus strain yFS275 amino acid usage table.png (Schizosaccharomyces japonicus strain yFS275 amino acid usage table. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=7763)
- 18:08, 25 August 2010 Elyons (Talk | contribs) uploaded File:Schizosaccharomyces pombe 972h codon usage table.png (Codon usage table for Schizosaccharomyces pombe 972h. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=1483)
- 18:06, 25 August 2010 Elyons (Talk | contribs) uploaded File:Schizosaccharomyces japonicus strain yFS275 codon usage table.png (Codon usage table for Schizosaccharomyces japonicus strain yFS275. http://genomevolution.org/CoGe/OrganismView.pl?dsgid=7763)
- 16:44, 25 August 2010 Elyons (Talk | contribs) uploaded File:Master 7763 1483.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.ks.hist.png (Histogram of synonymous mutation rates for syntenic gene pairs identified between the Schizosaccharomyces fungi: japonicus strain yFS275 and pombe 972h. http://genomevolution.org/r/pi4)
- 16:39, 25 August 2010 Elyons (Talk | contribs) uploaded File:Master 7763 1483.CDS-CDS.lastz.dag.go c4 D20 g10 A5.aligncoords.gcoords ct0.w1200.ks.png (SynMap syntenic dotplot of two Schizosaccharomyces fungi: japonicus strain yFS275 (x-axis) and pombe 972h (y-axis). http://genomevolution.org/r/pi4)