Web Services REST API
From CoGepedia
Revision as of 18:17, 15 March 2016 by Mbomhoff (Talk | contribs) (Mbomhoff moved page Web Services RESTful API to Web Services REST API)
Our web services let you incorporate CoGe's database of organisms, genomes, and other data sets into your web site or pipeline.
Documentation
- Interactive documentation: https://genomevolution.org/r/apidocs
- Specification document: http://docs.google.com/document/d/1GXOPIVvyTwoGR2IRjDNmdd2nj_6d8db7jx9hG8RxTDc
- Embedding CoGe JBrowse in another website
- Automated Testing (Robot Framework): https://geco.iplantcollaborative.org/coge/test/log.html
Examples
Organism Search
curl https://genomevolution.org/coge/api/v1/organisms/search/col-0 { "organisms": [ { "id": "1", "name": "Arabidopsis thaliana Col-0 (thale cress)", "description": "Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis" } ] }
Genome Fetch
curl https://genomevolution.org/coge/api/v1/genomes/16911 { "id": 16911 "name": "", "description": "", "version": "10.02", "link": "", "restricted": false, "sequence_type": { "name": "unmasked", "description": "unmasked sequence data" }, "experiments": [31,32,33, ...], "metadata": [], }
More examples to be added soon!