Potato-Utricular-Genlisea Syntenic Depth old data

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Table of syntenic depth measurements of potato versus Utricularia and Genlisea:

Parameters
Results

Window size: 10

Cutoff: 0.1%

(One syntenic genes in a span of 10 genes)

http://genomevolution.org/r/4nfz

Genlisea aurea
Depth 1 5196 of 5705 91.08%
Depth 2 446 of 5705 7.82%
Depth 3 58 of 5705 1.02%
Depth 4 5 of 5705 0.09%


Utricularia gibba
Depth 1 9307 of 14433 64.48%
Depth 2 3393 of 14433 23.51%
Depth 3 1130 of 14433 7.83%
Depth 4 382 of 14433 2.65%
Depth 5 134 of 14433 0.93%
Depth 6 51 of 14433 0.35%
Depth 7 26 of 14433 0.18%
Depth 8 6 of 14433 0.04%
Depth 9 4 of 14433 0.03%

Window size: 10

Cutoff: 0.2%

(Two syntenic genes in a span of 10 genes)

http://genomevolution.org/r/4nlz

Genlisea aurea
Depth 1 1436 of 1478 97.16%
Depth 2 39 of 1478 2.64%
Depth 3 3 of 1478 0.20%


Utricularia gibba
Depth 1 3384 of 4215 80.28%
Depth 2 651 of 4215 15.44%
Depth 3 124 of 4215 2.94%
Depth 4 42 of 4215 1.00%
Depth 5 9 of 4215 0.21%
Depth 6 5 of 4215 0.12%

Window size: 5

Cutoff: 0.1%

(One syntenic genes in a span of 5 genes)

http://genomevolution.org/r/4nlx

Genlisea aurea
Depth 1 1295 of 1316 98.40%
Depth 2 21 of 1316 1.60%


Utricularia gibba
Depth 1 2631 of 3158 83.31%
Depth 2 460 of 3158 14.57%
Depth 3 59 of 3158 1.87%
Depth 4 6 of 3158 0.19%
Depth 5 2 of 3158 0.06%

Window size: 20

Cutoff: 0.1%

(two syntenic genes in a span of 20 genes)

http://genomevolution.org/r/4nm1

Genlisea aurea
Depth 1 2732 of 2880 94.86%
Depth 2 142 of 2880 4.93%
Depth 3 6 of 2880 0.21%

Utricularia gibba
Depth 1 7097 of 9850 72.05%
Depth 2 1919 of 9850 19.48%
Depth 3 569 of 9850 5.78%
Depth 4 171 of 9850 1.74%
Depth 5 59 of 9850 0.60%
Depth 6 20 of 9850 0.20%
Depth 7 6 of 9850 0.06%
Depth 8 4 of 9850 0.04%
Depth 9 2 of 9850 0.02%
Depth 10 1 of 9850 0.01%
Depth 12 1 of 9850 0.01%
Depth 13 1 of 9850 0.01%