Difference between revisions of "Angisperm ancestral genome reconstruction"
From CoGepedia
(Created page with 'Collaboration of: * Chunfang Zheng * David Sankoff * Haibao Tang * Eric Lyons == Overview == Zheng and Sankoff have developed and continue to refine a mathematical framework fo...') |
(→Overview) |
||
| Line 11: | Line 11: | ||
Of particular interest are: | Of particular interest are: | ||
# the ancestral genome of the eudicots which have undergone a [[paleohexaploidy]] | # the ancestral genome of the eudicots which have undergone a [[paleohexaploidy]] | ||
| − | # | + | ## [http://www.springerlink.com/content/71656277268rx541/ OMG! Orthologs in Multiple Genomes – Competing Graph-Theoretical Formulations]] |
| + | ## [http://ieeexplore.ieee.org/xpl/login.jsp?tp=&arnumber=6182649&url=http%3A%2F%2Fieeexplore.ieee.org%2Fxpls%2Fabs_all.jsp%3Farnumber%3D6182649 Ancient angiosperm hexaploidy meets ancestral eudicot gene order] | ||
| + | # the ancestral genome of the angiosperms | ||
| + | # the ancestral genome of the monocots | ||
Revision as of 19:14, 13 May 2012
Collaboration of:
- Chunfang Zheng
- David Sankoff
- Haibao Tang
- Eric Lyons
Overview
Zheng and Sankoff have developed and continue to refine a mathematical framework for reconstructing ancestral genome states of various angiosperm lineages using syntenic blocks identified by SynMap, an interactive tool for the pairwise comparison of whole genomes development by Tang and Lyons. This problem is complicated by whole genome duplications, a common occurrence in angiosperm lineages.
Of particular interest are:
- the ancestral genome of the eudicots which have undergone a paleohexaploidy
- the ancestral genome of the angiosperms
- the ancestral genome of the monocots
