Difference between revisions of "Experiment Metadata"
From CoGepedia
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* Filename: the name of the file containing the experiment's data | * Filename: the name of the file containing the experiment's data | ||
** supported file types: .csv, .bam, .bed, .gff, .vcf ... see [[LoadExperiment]] for more info | ** supported file types: .csv, .bam, .bed, .gff, .vcf ... see [[LoadExperiment]] for more info | ||
Revision as of 18:44, 15 September 2014
The experiment metadata file is a tab-separated file ending in .txt that contains a header line followed by a metadata line for each experiment. There are some required columns and free-form optional columns.
Required Columns (in order as below):
- Filename: the name of the file containing the experiment's data
- supported file types: .csv, .bam, .bed, .gff, .vcf ... see LoadExperiment for more info
- Name: the name of the experiment
Optional Columns (in any order):
- Description: a description of the experiment
- Source: the source of the data file (i.e., JGI)
- Version: the version number
- Restricted: restrict the data from public access ("yes" or "no", default is no)
- Add your own
Note: adding "_link" to the end of the field name denotes a link for another column (i.e., columns "citation" and "citation_link")
Example:
Looks like this: http://genomevolution.org/CoGe/ExperimentView.pl?eid=193
