EPIC-CoGe Videos
From CoGepedia
Revision as of 12:08, 15 September 2016 by Sdavey (Talk | contribs) (→How to RNA-Seq in CoGe in three minutes)
Contents
- 1 EPIC-CoGe used for visualization of quantitative genomic data (epigenomic and RNASeq)
- 2 EPIC-CoGe used for SNP visualization
- 3 How to RNA-Seq in CoGe in three minutes
- 4 How to search for features in EPIC-CoGe
- 5 How to search quantitative tracks in EPIC-CoGe
- 6 How to search SNP tracks in EPIC-CoGe
- 7 How to download data in EPIC-CoGe
EPIC-CoGe used for visualization of quantitative genomic data (epigenomic and RNASeq)
EPIC-CoGe used for SNP visualization
How to RNA-Seq in CoGe in three minutes
This short video shows how to load, process, and visualize RNA-Seq data in CoGe:
- RNA-Seq Pipeline: Expression Analysis Pipeline
- Quantitation of reads per position along a genome
- Quantitation of FPKM for genomes with structural gene annotations
- Individually mapped reads
- All visualized in the EPIC-CoGe Browser (Based on JBrowse)
How to search for features in EPIC-CoGe
This short video shows how to use the new Search button to find genomic features by name and navigate to them in the EPIC-CoGe Browser (Based on JBrowse)
How to search quantitative tracks in EPIC-CoGe
This short video shows how to search quantitative data tracks for max, min or a range of values in the EPIC-CoGe Browser (Based on JBrowse)
How to search SNP tracks in EPIC-CoGe
This short video shows how to search SNP tracks for SNPs that overlap particular types of features or for particular types of SNPs in the EPIC-CoGe Browser (Based on JBrowse)
How to download data in EPIC-CoGe
This short video shows how to download track data, transformed track data, and search results in the EPIC-CoGe Browser (Based on JBrowse)
