Difference between revisions of "Creosote"
From CoGepedia
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CLC4 assembly 685,475 contigs (508MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12244 | CLC4 assembly 685,475 contigs (508MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12244 | ||
+ | *Syntenic Path Assembly to peach: http://genomevolution.org/r/3xpd | ||
==[[Syntenic Path Assembly]]== | ==[[Syntenic Path Assembly]]== |
Revision as of 13:23, 1 September 2011
Assembly
Loading into CoGe
SoapDeNovo assemly: 1,570,116 contigs (370MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12183 (Note: too many contigs to process and visualize in SynMap)
SoapDeNovo assembly of contigs >= 2000nt: 6,976 contigs (20MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12185
ABySS assembly (bpsize=64, 2kb minimum contig size): 122,972 contigs (392MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12275
- Syntenic Path Assembly to peach: http://genomevolution.org/r/3xmq
Velvet assembly 515,190 contigs (241MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12245
CLC4 assembly 685,475 contigs (508MB): http://genomevolution.org/CoGe/OrganismView.pl?dsgid=12244
- Syntenic Path Assembly to peach: http://genomevolution.org/r/3xpd