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* Lyons E, Freeling M (2008) How to usefully compare homologous plant genes and chromosomes a |Tang H, Lyons E, Pedersen B, Schnable JC, Paterson AH, Freeling M (2011) Screening synteny blocks in pairwise genome comparisons through in

...ry.wiley.com/doi/10.1111/j.1365-313X.2007.03326.x/full Eric Lyons, Michael Freeling (2008) How to usefully compare homologous plant genes and chromosomes as DN ...ao Tang, Xiyin Wang, John Bowers, Andrew Paterson, Damon Lisch and Michael Freeling (2008) Finding and Comparing Syntenic Regions among Arabidopsis and the Out

...Ge is a collaboration with the Lyons Lab at the University of Arizona, the Freeling Lab at UC Berkeley, and the iPlant Collaborative. NSF has supported CoGe i Freeling lab website: http://freelinglab.berkeley.edu/

*Michael Freeling

...uences are involved in regulating the expression of neighboring genes.<ref>Freeling, M. and Subramaniam, S. (2009). [http://www.ncbi.nlm.nih.gov/pubmed/1924923 ...he process of identifying and filtering conserved noncoding sequences, the Freeling lab has developed the [[CNS Discovery Pipeline]].

...tated [[CNS | conserved non-coding sequences]] (probably identified by the Freeling lab). These will most likely be found in plant genomes. (VALUES: 0, 1; DEF ...eviously annotated [[genespace | gene space]]s (probably identified by the Freeling lab). This will most likely be found in plant genomes. (VALUES: 0, 1; DEFA

...ysis of syntenic gene deletion in the grasses. James C. Schnable, Michael Freeling and Eric Lyons''' (2012) Genome Biology and Evolution] ...n lab at the Plant Center at the University of Georgia and modified by the Freeling lab to include GEvo links. From: [http://www.plantphysiol.org/cgi/content/a

Schnable JC, Freeling M. "Genes Identified by Visible Mutant Phenotypes Show Increased Bias towar ...gous syntenic regions was done by [[User:Jschnable|James Schnable]] of the Freeling lab at UC-Berkeley, the contact person for any questions about the data.

* James Schnable in Michael Freeling's lab at UC Berkeley for generating maize-sorghum [[syntenic gene sets]]. * [http://microscopy.berkeley.edu/~freeling/ Michael Freeling] at UC Berkeley

Schnable JC, Freeling M. "Genes Identified by Visible Mutant Phenotypes Show Increased Bias towar

...ions which have used the sequenced plant genomes page (publications of the Freeling & Lyons lab omitted):

...ining each other. This method of identification is previously described in Freeling et al 2008.

...CoGe are annotated only with publicly available gene models. However, the Freeling Lab has also decorated a number of genomes with additional information. For

[mailto:freeling@uclink.berkeley.edu?Subject=Bugs Mike Freeling ]

&nbsp;The CNS Discovery Pipeline is a suite of software developed within the Freeling lab to identify [[orthologs]] or [[homeologs]] and compare the regions surr * turco,pedersen,and freeling 2011 automated thaliana_v10 thaliana_v10 cns (dsgid:16746)

This problem was identified by Mike Freeling.

The favored approach in the Freeling Lab to identifying [[CNS|conserved noncoding sequences]] in an automated fa

14. Lyons, E. & Freeling, M. How to usefully compare homologous plant genes and chromosomes as DNA s