Difference between revisions of "SeqView"
From CoGepedia
(Created page with '500px [[Image:SeqView-display-DNA.png|thumb|right|500px|Showing protein sequence, feature information, and GC content of DNA sequen...') |
|||
| Line 1: | Line 1: | ||
[[Image:SeqView-display-DNA.png|thumb|right|500px]] | [[Image:SeqView-display-DNA.png|thumb|right|500px]] | ||
| − | [[Image:SeqView-display- | + | [[Image:SeqView-display-protein.png|thumb|right|500px|Showing protein sequence, feature information, and GC content of DNA sequence.]] |
SeqView displays a single sequence in fasta format. | SeqView displays a single sequence in fasta format. | ||
Revision as of 21:51, 20 February 2010
SeqView displays a single sequence in fasta format.
Features:
- Adding additional of 3' and 5' sequence
- Generating the reverse complement of the sequence
- Translating the sequence
- Extracting all genomic features encompassed by the sequence
- Calculating GC content of the sequence
- Information about the feature used to anchoring the retrieved sequence (if applicable)
Links to:
- ViennaFold for determining RNA secondary structure
- CoGeBlast for searching genomes with the sequence
- tRNAView for searching the sequence for tRNAs
