Difference between revisions of "Documentation"
From CoGepedia
(→Web Application Documentation) |
(→Additional CoGe Pages) |
||
Line 15: | Line 15: | ||
*[[CoGeAlign]] Generate multiple sequence alignments | *[[CoGeAlign]] Generate multiple sequence alignments | ||
*[[GenomeMap]] Visually map genomic features to their genomic locations | *[[GenomeMap]] Visually map genomic features to their genomic locations | ||
+ | *[[tRNAView]] Search for tRNAs in genomes and genomic sequence | ||
+ | *[[HSPView]] Viewing regions of sequence similarity as identified through a variety of tools in CoGe using a variety of sequence comparison algorithms | ||
+ | *[[MatrixView]] View alignment scoring matrices. | ||
== Backend Documentation == | == Backend Documentation == |
Revision as of 12:23, 10 August 2009
Contents
Web Application Documentation
Main CoGe Entrance Pages
- OrganismView Search and get an overview of an organism and its genomic information
- CoGeBlast Blast against any number of organisms using CoGe's Blast interface (supports Blast, and BlastZ).
- FeatView Search for genomic features by name or description
- SynMap Generate syntenic dotplots of any two genomes
- GEvo Compare multiple genomic regions using a variety of sequence comparison algorithms for high-resolution analysis to quickly identify patterns of genome evolution
Additional CoGe Pages
- FeatList CoGe's tool for managing list of genomic features
- FastaView Generate Fasta sequences of multiple genomic features
- SeqView Generate a Fasta sequence of a genomic region
- GenomeView CoGe's interactive Genome Browser
- CoGeAlign Generate multiple sequence alignments
- GenomeMap Visually map genomic features to their genomic locations
- tRNAView Search for tRNAs in genomes and genomic sequence
- HSPView Viewing regions of sequence similarity as identified through a variety of tools in CoGe using a variety of sequence comparison algorithms
- MatrixView View alignment scoring matrices.
Backend Documentation
- CoGe Database
- CoGe Database API
- GeLo Graphics Library
- Genome Browser Documentation
- Gobe Flash Results Viewer (Used in Gevo) Documentation